Miyakogusa Predicted Gene

chr4.CM0003.50.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0003
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PF84_VITVI 598 74.1 83.8 (tr|A7PF84) Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016948001 PE=4 SV=1
TAIR_pep AT5G52580.1 546 61.6 73.0 | Symbols: | RAB GTPase activator | chr5:21355278-21360074 FORWARD
Medicago IMGA|AC152423_8.4 723 76.9 82.4 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2 26593613-26583681 F EGN_Mt071002 20080227
Soybean Glyma13g22760.1 738 81.9 85.5  
Lotus Consensus KMC000255A_C01 281 97.5 97.5 KMC000255A_c01
3' Unigene KMC000255A_C01 174 98.9 98.9 KMC000255A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0003.50.nd length: 478 aa.
IPR000195 RabGAP/TBC
method AccNumber shortName E-value location
HMMPfam PF00566 TBC 1.1e-08 193-430
HMMSmart SM00164 no description 1.5e-53 193-432
ProfileScan PS50086 TBC_RABGAP 38.278 196-406
superfamily SSF47923 Ypt/Rab-GAP 7.8e-18 164-339
341-464
no_ID  
HMMPanther PTHR22957 TBC1 1.6e-111 165-411
HMMPanther PTHR22957:SF34 TBC1 1.6e-111 165-411
Seg seg seg NA 41-52
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0003.50.nd 478 0.348 0.067 0.073 0.491 _ 5
Wolf-PSORT
chr4.CM0003.50.nd	nucl 9, cyto 2, pero 2, cyto_pero 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0003.50.nd Targeted 7.910 -2.094 -5.944 8.5e-04 15.948