Miyakogusa Predicted Gene

chr4.CM0003.160.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0003
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A4Q7K5_MEDTR 1266 75.2 82.2 (tr|A4Q7K5) Immunoglobulin/major histocompatibility complex; Tetratricopeptide-like helical OS=Medicago truncatula GN=MtrDRAFT_AC182813g24v2 PE=4 SV=1
TAIR_pep AT5G35430.1 677 46.5 62.9 | Symbols: | binding | chr5:13679307-13682965 FORWARD
Medicago IMGA|AC153121_8.4 1266 75.2 82.2 Immunoglobulin/major histocompatibility complex; Tetratricopeptide-like helical chr08_pseudomolecule_IMGAG_V2 26740156-26746879 E EGN_Mt071002 20080227
Soybean Glyma17g11950.1 1340 80.4 85.9  
Lotus Consensus KMC001149A_C01 426 100.0 100.0 KMC001149A_c01
3' Unigene KMC001149A_C01 1013 97.6 97.6 KMC001149A_c01
5' Unigene AV408279 371 100.0 100.0 MWL038h12_r
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0003.160.nc length: 835 aa.
IPR008940 Protein prenyltransferase
method AccNumber shortName E-value location
superfamily SSF48439 Protein 6.4e-22 332-817
IPR013026 Tetratricopeptide region
HMMSmart SM00028 no description 24 33-66
371-404
421-454
759-792
ProfileScan PS50005 TPR 8.113 371-404
759-792
ProfileScan PS50293 TPR_REGION 9.058 759-792
no_ID  
Gene3D 1.25.40.10 no description 0.00035 40-464
638-823
HMMPanther PTHR12979 FAMILY 3.8e-244 7-235
252-578
599-834
HMMPanther PTHR12979:SF4 SUBFAMILY 3.8e-244 7-235
252-578
599-834
Seg seg seg NA 3-21
226-243
572-582
superfamily SSF48452 TPR-like 8.4e-07 41-331
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0003.160.nc 835 0.306 0.063 0.187 0.787 _ 3
Wolf-PSORT
chr4.CM0003.160.nc	nucl 6, nucl_plas 5, plas 2, chlo 1, cyto 1, mito 1, vacu 1, pero 1, golg 1, chlo_mito 1, cyto_pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0003.160.nc Not targeted -49.777 -18.936 -1.591 74.03% -29.250