Miyakogusa Predicted Gene
- chr3.LjT34H24.100.nd
- Related links:
- Predicted Sequence Links:
- Genome Sequence: LjT34H24
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A7P7R8_VITVI |
409 |
63.7 |
74.1 |
(tr|A7P7R8) Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034568001 PE=4 SV=1 |
|---|
| TAIR_pep |
AT1G80210.1 |
299 |
52.8 |
66.9 |
| Symbols: | similar to mov34 family protein [Arabidopsis thaliana] (TAIR:AT3G06820.2); similar to Os05g0542600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056196.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46054.1); contains InterPro domain Mov34/MPN/PAD-1 (InterPro:IPR000555) | chr1:30168249-30170520 REVERSE |
|---|
| Medicago |
IMGA|AC161398_3.4 |
470 |
72.0 |
77.4 |
Mov34-1 chr02_pseudomolecule_IMGAG_V2 24802978-24798664 E EGN_Mt071002 20080227 |
|---|
| Soybean |
Glyma15g01310.1 |
476 |
73.1 |
79.5 |
|
|---|
| 3' Unigene |
BP069595 |
724 |
96.0 |
96.0 |
GNf031b01 |
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr3.LjT34H24.100.nd |
length: 322 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Coil |
coil |
coiled-coil |
NA |
247-275 |
| HMMPanther |
PTHR10410 |
EUKARYOTIC |
1.4e-94 |
1-265 |
| HMMPanther |
PTHR10410:SF2 |
C6.1A |
1.4e-94 |
1-265 |
| Seg |
seg |
seg |
NA |
59-78
91-107 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr3.LjT34H24.100.nd |
322 |
0.075 |
0.092 |
0.083 |
0.340 |
_ |
4
|
- Wolf-PSORT
chr3.LjT34H24.100.nd nucl 6, extr 4, chlo 2, cyto 1, vacu 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr3.LjT34H24.100.nd |
Not targeted |
-34.140 |
0 |
-5.706 |
39.70% |
-28.434
|