database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | Q8H6S5_PONTR | 1901 | 82.0 | 88.0 | (tr|Q8H6S5) CTV.2 OS=Poncirus trifoliata GN=CTV.2 PE=4 SV=1 |
TAIR_pep | AT1G15750.4 | 1826 | 78.7 | 85.9 | | Symbols: WSIP1, TPL | TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) | chr1:5415081-5420354 REVERSE |
Medicago | IMGA|AC148304_14.5 | 1966 | 86.2 | 89.1 | Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like chr04_pseudomolecule_IMGAG_V2 1736381-1727852 E EGN_Mt071002 20080227 |
Soybean | Glyma08g22910.3 | 2034 | 88.3 | 91.3 | |
Lotus Consensus | KMC006103A_C01 | 884 | 99.8 | 99.8 | KMC006103A_c01 |
3' Unigene | KMC000195A_C02 | 1043 | 100.0 | 100.0 | KMC000195A_c02 |
5' Unigene | AV407693 | 293 | 100.0 | 100.0 | MWL028h06_r |
chr3.LjT34E16.40.nc | length: 1135 aa. | |||
IPR001680 | WD-40 repeat | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
FPrintScan | PR00320 | GPROTEINBRPT | 0.00017 | 480-494 613-627 941-955 |
HMMPfam | PF00400 | WD40 | 0.041 | 453-493 497-537 916-954 1076-1099 |
HMMSmart | SM00320 | no description | 25 | 346-385 402-446 452-493 496-537 540-583 586-626 832-869 872-912 915-954 1007-1047 1060-1099 |
ProfileScan | PS50082 | WD_REPEATS_2 | 12.747 | 459-502 604-635 922-963 |
ProfileScan | PS50294 | WD_REPEATS_REGION | 14.872 | 414-679 879-963 |
ScanRegExp | PS00678 | WD_REPEATS_1 | NA | 480-494 941-955 |
IPR006594 | Lissencephaly type-1-like homology motif | |||
HMMSmart | SM00667 | no description | 3.1e-05 | 4-36 |
ProfileScan | PS50896 | LISH | 10.297 | 4-36 |
IPR006595 | CTLH, C-terminal to LisH motif | |||
HMMSmart | SM00668 | no description | 2.4e-15 | 34-92 |
ProfileScan | PS50897 | CTLH | 14.024 | 34-92 |
IPR011041 | Soluble quinoprotein glucose dehydrogenase | |||
superfamily | SSF50952 | Soluble | 4.1e-17 | 347-477 |
IPR011046 | WD40-like | |||
superfamily | SSF50978 | WD40-repeat | 5e-10 | 980-1102 |
IPR011047 | Quinonprotein alcohol dehydrogenase-like | |||
superfamily | SSF50998 | Quinoprotein | 1.2e-57 | 478-954 |
IPR013720 | LisH | |||
HMMPfam | PF08513 | LisH | 0.00071 | 6-32 |
no_ID | ||||
Gene3D | 2.130.10.10 | no description | 2.4e-27 | 420-693 847-1098 |
HMMPanther | PTHR22847 | WD40 | 5.3e-15 | 419-637 |
Seg | seg | seg | NA | 266-280 325-341 704-721 870-891 1116-1130 |
Name | Length | cTP | mTP | SP | other | Loc. | RC |
---|---|---|---|---|---|---|---|
chr3.LjT34E16.40.nc | 1135 | 0.095 | 0.089 | 0.605 | 0.466 | S | 5 |
chr3.LjT34E16.40.nc nucl 9, chlo 4
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
chr3.LjT34E16.40.nc | Not targeted | -22.550 | 0 | -3.934 | 16.65% | -18.616 |