Miyakogusa Predicted Gene

chr3.LjT34E16.40.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT34E16
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL Q8H6S5_PONTR 1901 82.0 88.0 (tr|Q8H6S5) CTV.2 OS=Poncirus trifoliata GN=CTV.2 PE=4 SV=1
TAIR_pep AT1G15750.4 1826 78.7 85.9 | Symbols: WSIP1, TPL | TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) | chr1:5415081-5420354 REVERSE
Medicago IMGA|AC148304_14.5 1966 86.2 89.1 Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like chr04_pseudomolecule_IMGAG_V2 1736381-1727852 E EGN_Mt071002 20080227
Soybean Glyma08g22910.3 2034 88.3 91.3  
Lotus Consensus KMC006103A_C01 884 99.8 99.8 KMC006103A_c01
3' Unigene KMC000195A_C02 1043 100.0 100.0 KMC000195A_c02
5' Unigene AV407693 293 100.0 100.0 MWL028h06_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.LjT34E16.40.nc length: 1135 aa.
IPR001680 WD-40 repeat
method AccNumber shortName E-value location
FPrintScan PR00320 GPROTEINBRPT 0.00017 480-494
613-627
941-955
HMMPfam PF00400 WD40 0.041 453-493
497-537
916-954
1076-1099
HMMSmart SM00320 no description 25 346-385
402-446
452-493
496-537
540-583
586-626
832-869
872-912
915-954
1007-1047
1060-1099
ProfileScan PS50082 WD_REPEATS_2 12.747 459-502
604-635
922-963
ProfileScan PS50294 WD_REPEATS_REGION 14.872 414-679
879-963
ScanRegExp PS00678 WD_REPEATS_1 NA 480-494
941-955
IPR006594 Lissencephaly type-1-like homology motif
HMMSmart SM00667 no description 3.1e-05 4-36
ProfileScan PS50896 LISH 10.297 4-36
IPR006595 CTLH, C-terminal to LisH motif
HMMSmart SM00668 no description 2.4e-15 34-92
ProfileScan PS50897 CTLH 14.024 34-92
IPR011041 Soluble quinoprotein glucose dehydrogenase
superfamily SSF50952 Soluble 4.1e-17 347-477
IPR011046 WD40-like
superfamily SSF50978 WD40-repeat 5e-10 980-1102
IPR011047 Quinonprotein alcohol dehydrogenase-like
superfamily SSF50998 Quinoprotein 1.2e-57 478-954
IPR013720 LisH
HMMPfam PF08513 LisH 0.00071 6-32
no_ID  
Gene3D 2.130.10.10 no description 2.4e-27 420-693
847-1098
HMMPanther PTHR22847 WD40 5.3e-15 419-637
Seg seg seg NA 266-280
325-341
704-721
870-891
1116-1130
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.LjT34E16.40.nc 1135 0.095 0.089 0.605 0.466 S 5
Wolf-PSORT
chr3.LjT34E16.40.nc	nucl 9, chlo 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.LjT34E16.40.nc Not targeted -22.550 0 -3.934 16.65% -18.616