Miyakogusa Predicted Gene

chr3.LjT23H01.130.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT23H01
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q8L3W1_ARATH 368 50.6 63.9 (tr|Q8L3W1) Reduced vernalization response 1 (Putative uncharacterized protein At3g18990) (At3g18990) OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1
TAIR_pep AT3G18990.1 368 50.6 63.9 | Symbols: REM39, VRN1 | VRN1 (REDUCED VERNALIZATION RESPONSE 1) | chr3:6549083-6551574 REVERSE
Medicago IMGA|AC137825_7.4 641 73.4 82.6 Transcriptional factor B3; Cupredoxin chr04_pseudomolecule_IMGAG_V2 17890898-17887869 F EGN_Mt071002 20080227
Soybean Glyma12g05250.2 661 79.9 88.4  
Lotus Consensus KMC002861A_C01 236 85.4 85.4 KMC002861A_c01
3' Unigene KMC002861A_C01 214 85.3 85.3 KMC002861A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.LjT23H01.130.nc length: 425 aa.
IPR003340 Transcriptional factor B3
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 1.9e-20 5-100
291-389
ProfileScan PS50863 B3 14.410 5-98
292-387
IPR008972 Cupredoxin
superfamily SSF49503 Cupredoxins 0.0027 38-113
no_ID  
Coil coil coiled-coil NA 227-248
Gene3D 2.40.330.10 no description 5.6e-07 3-100
291-386
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.LjT23H01.130.nc 425 0.030 0.714 0.048 0.304 M 3
Wolf-PSORT
chr3.LjT23H01.130.nc	nucl 7, chlo 4, cysk_nucl 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.LjT23H01.130.nc Not targeted -32.513 -0.033 -2.539 36.01% -29.941