Miyakogusa Predicted Gene

chr3.LjT15F18.40.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT15F18
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P6D4_VITVI 214 72.3 86.9 (tr|A7P6D4) Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034024001 PE=3 SV=1
TAIR_pep AT1G54050.1 156 62.4 84.0 | Symbols: | 17.4 kDa class III heat shock protein (HSP17.4-CIII) | chr1:20183226-20183790 REVERSE
Medicago IMGA|AC160241_10.4 222 85.2 89.8 Heat shock protein Hsp20 chr08_pseudomolecule_IMGAG_V2 6788744-6792978 E EGN_Mt071002 20080227
Soybean Glyma07g04860.1 243 88.5 89.9  
3' Unigene KMC007688A_C01 458 97.0 97.0 KMC007688A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.LjT15F18.40.nd length: 155 aa.
IPR002068 Heat shock protein Hsp20
method AccNumber shortName E-value location
HMMPfam PF00011 HSP20 3.5e-29 47-153
ProfileScan PS01031 HSP20 20.749 47-140
IPR008978 HSP20-like chaperone
superfamily SSF49764 HSP20-like 1.5e-27 1-155
no_ID  
Gene3D 2.60.40.790 no description 1.1e-20 44-154
HMMPanther PTHR11527 SMALL 7.3e-43 9-155
HMMPanther PTHR11527:SF14 HEAT-SHOCK 7.3e-43 9-155
Seg seg seg NA 7-18
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.LjT15F18.40.nd 155 0.173 0.090 0.121 0.659 _ 3
Wolf-PSORT
chr3.LjT15F18.40.nd	nucl 6, cyto 5, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.LjT15F18.40.nd Not targeted -43.634 -0.006 -9.932 61.59% -33.697