Miyakogusa Predicted Gene

chr3.LjT02L14.10.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT02L14
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B3TDK6_SOYBN 1506 83.7 92.3 (tr|B3TDK6) Lipoxygenase L-3 OS=Glycine max PE=4 SV=1
TAIR_pep AT1G55020.1 1068 60.1 76.0 | Symbols: LOX1 | LOX1 (Lipoxygenase 1); lipoxygenase | chr1:20529465-20533810 FORWARD
Medicago IMGA|AC137554_40.4 1527 85.0 92.0 Lipoxygenase chr02_pseudomolecule_IMGAG_V2 23011381-23017213 E EGN_Mt071002 20080227
Soybean Glyma15g03030.1 1506 83.7 92.3  
Lotus Consensus KMC000759A_C01 133 82.8 82.8 KMC000759A_c01
3' Unigene KMC002843A_C01 157 80.7 80.7 KMC002843A_c01
5' Unigene AV417872 170 81.4 81.4 MWM149b11_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.LjT02L14.10.nd length: 860 aa.
IPR000907 Lipoxygenase
method AccNumber shortName E-value location
Molecular Function GO:0005506 iron ion binding    
Biological Process GO:0006118 electron transport    
Molecular Function GO:0016165 lipoxygenase activity    
HMMPanther PTHR11771 LIPOXYGENASE 0 7-860
IPR001024 Lipoxygenase, LH2
HMMPfam PF01477 PLAT 4.7e-40 61-164
HMMSmart SM00308 no description 1.3e-66 13-167
ProfileScan PS50095 PLAT 21.365 41-166
IPR001246 Plant lipoxygenase
Molecular Function GO:0005506 iron ion binding    
Biological Process GO:0006118 electron transport    
Molecular Function GO:0016165 lipoxygenase activity    
FPrintScan PR00468 PLTLPOXGNASE 1.6e-96 136-154
162-183
201-217
234-253
302-323
347-363
386-405
452-476
773-787
IPR013819 Lipoxygenase, C-terminal
FPrintScan PR00087 LIPOXYGENASE 2.3e-25 499-516
517-534
537-557
HMMPfam PF00305 Lipoxygenase 0 176-844
ScanRegExp PS00081 LIPOXYGENASE_2 8e-5 544-554
ScanRegExp PS00711 LIPOXYGENASE_1 8e-5 517-531
superfamily SSF48484 Lipoxigenase 1.4e-294 171-860
no_ID  
Gene3D 1.20.245.10 no description 2.6e-146 514-860
Gene3D 2.60.60.20 no description 2.2e-63 8-188
Gene3D 3.10.450.60 no description 1.6e-53 379-513
Gene3D 4.10.372.10 no description 1.4e-29 290-378
Gene3D 4.10.375.10 no description 1.5e-44 189-288
HMMPanther PTHR11771:SF2 LIPOXYGENASE 0 7-860
superfamily SSF49723 Lipase/lipooxygenase 1.5e-64 12-170
Putative transmembrane regions
  From To
TM segments
SOSUI		 30 52
697 719
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.LjT02L14.10.nd 860 0.067 0.530 0.031 0.532 _ 5
Wolf-PSORT
chr3.LjT02L14.10.nd	cyto 9, chlo 2, nucl 1, vacu 1, golg 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.LjT02L14.10.nd Not targeted -26.700 -2.351 -2.489 23.86% -21.860