Miyakogusa Predicted Gene

chr3.CM0792.150.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0792
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7NYV2_VITVI 265 61.0 70.2 (tr|A7NYV2) Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024267001 PE=4 SV=1
TAIR_pep AT2G29210.1 253 61.2 69.9 | Symbols: | splicing factor PWI domain-containing protein | chr2:12565233-12569245 FORWARD
Medicago IMGA|AC202498_22.3 339 48.5 58.4 Splicing factor PWI chr04_pseudomolecule_IMGAG_V2 17065983-17059995 E EGN_Mt071002 20080227
Soybean Glyma12g06360.1 357 78.7 81.9  
Lotus Consensus KMC016915A_C01 620 98.8 98.8 KMC016915A_c01
3' Unigene KMC016915A_C01 880 98.5 98.5 KMC016915A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0792.150.nd length: 868 aa.
IPR002483 Splicing factor PWI
method AccNumber shortName E-value location
Biological Process GO:0006397 mRNA processing    
HMMPfam PF01480 PWI 1.4e-35 45-117
HMMSmart SM00311 no description 7.5e-31 40-114
no_ID  
Coil coil coiled-coil NA 123-151
776-817
Gene3D 1.20.1390.10 no description 4.5e-40 24-133
HMMPanther PTHR23148 SERINE/ARGININE 3.7e-86 2-868
Seg seg seg NA 126-138
146-162
217-240
258-307
318-407
410-430
442-453
457-481
762-818
superfamily SSF56959 Leukocidin 0.0055 30-99
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0792.150.nd 868 0.262 0.225 0.032 0.699 _ 3
Wolf-PSORT
chr3.CM0792.150.nd	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0792.150.nd Not targeted -32.098 -0.668 -2.072 35.08% -29.359