Miyakogusa Predicted Gene

chr3.CM0634.670.nc

Related links:

GeneModel
GBrowse(chr3.CM0634.670.nc)

Predicted Sequence Links:

Genome Sequence: CM0634

Full length sequence(586958 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	Q9SDX4_ASTSI	1420	77.7	81.3	(tr\|Q9SDX4) Dynamin homolog OS=Astragalus sinicus GN=DH1 PE=2 SV=1
TAIR_pep	AT1G59610.1	1222	67.5	76.4	\| Symbols: CF1, ADL3 \| ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) \| chr1:21897078-21904445 FORWARD
Medicago	IMGA\|AC159185_30.4	346	60.3	68.9	Dynamin chr04_pseudomolecule_IMGAG_V2 5326668-5328305 H EGN_Mt071002 20080227
Soybean	Glyma12g37100.1	1425	78.2	82.0
Lotus Consensus	KMC000290A_C02	438	100.0	100.0	KMC000290A_c02
3' Unigene	KMC000290A_C02	1405	99.7	99.7	KMC000290A_c02

A list of protein families, domains and functional sites (searches in InterPro)

IPR000375	Dynamin central region
chr3.CM0634.670.nc				length: 924 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005525	GTP binding
HMMPfam	PF01031	Dynamin_M	9.8e-12	391-493
IPR001401	Dynamin
Molecular Function	GO:0003924	GTPase activity
Molecular Function	GO:0005525	GTP binding
FPrintScan	PR00195	DYNAMIN	3e-13	40-58 65-82 177-195 196-212
HMMPfam	PF00350	Dynamin_N	1.8e-38	43-208
HMMSmart	SM00053	no description	2.4e-06	4-258
ScanRegExp	PS00410	DYNAMIN	NA	66-75
IPR001849	Pleckstrin-like
HMMPfam	PF00169	PH	1.6e-19	583-706
HMMSmart	SM00233	no description	1.6e-15	583-708
ProfileScan	PS50003	PH_DOMAIN	15.435	582-706
IPR003130	Dynamin GTPase effector
Molecular Function	GO:0003924	GTPase activity
Molecular Function	GO:0005525	GTP binding
HMMPfam	PF02212	GED	7.1e-05	739-832
no_ID
Coil	coil	coiled-coil	NA	798-819
Gene3D	2.30.29.30	no description	1.3e-18	584-705
Gene3D	3.40.50.300	no description	3.6e-52	5-327
HMMPanther	PTHR11566	DYNAMIN	0	1-531 655-832
HMMPanther	PTHR11566:SF10	DYNAMIN-LIKE	0	1-531 655-832
Seg	seg	seg	NA	17-34 41-57 504-513 543-568 639-661 836-864 874-883 896-905
superfamily	SSF50729	PH	5e-19	581-723
superfamily	SSF52540	P-loop	0.0015	38-134 135-519

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr3.CM0634.670.nc	924	0.118	0.025	0.061	0.887	_	2

Wolf-PSORT

chr3.CM0634.670.nc	nucl 5, cyto 5, cyto_nucl 5

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr3.CM0634.670.nc	Not targeted	-10.376	0	-7.891	3.94%	-2.486