Miyakogusa Predicted Gene

chr3.CM0634.20.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0634
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PKH9_VITVI 2976 62.1 74.5 (tr|A7PKH9) Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019181001 PE=4 SV=1
TAIR_pep AT1G02080.1 2787 59.8 72.3 | Symbols: | transcriptional regulator-related | chr1:373694-386682 FORWARD
Medicago IMGA|AC151481_39.5 3868 79.3 86.0 CCR4-Not complex component, Not1 chr08_pseudomolecule_IMGAG_V2 755620-734082 E EGN_Mt071002 20080227
Soybean Glyma03g27270.1 3953 81.9 87.2  
Lotus Consensus KMC006286A_C01 718 99.5 99.5 KMC006286A_c01
3' Unigene KMC006286A_C01 670 100.0 100.0 KMC006286A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0634.20.nc length: 2378 aa.
IPR007196 CCR4-Not complex component, Not1
method AccNumber shortName E-value location
HMMPfam PF04054 Not1 6.2e-229 1992-2378
IPR009050 Globin-like
superfamily SSF46458 Globin-like 0.017 2249-2363
no_ID  
HMMPanther PTHR13162 CCR4-NOT 0 643-877
926-1173
1249-1582
1670-1807
1833-2374
Seg seg seg NA 424-435
916-927
973-984
1501-1526
1805-1818
2190-2200
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0634.20.nc 2378 0.178 0.082 0.136 0.682 _ 3
Wolf-PSORT
chr3.CM0634.20.nc	nucl 4, cyto 4, cyto_nucl 4, plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0634.20.nc Not targeted -37.939 0 -7.830 48.55% -30.109