Miyakogusa Predicted Gene

chr3.CM0590.120.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0590
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P2W3_VITVI 657 62.6 75.6 (tr|A7P2W3) Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030209001 PE=4 SV=1
TAIR_pep AT1G50120.1 585 55.3 68.6 | Symbols: | similar to unnamed protein product [Vitis vinifera] (GB:CAO42021.1); contains InterPro domain Rgp1 (InterPro:IPR014848); contains InterPro domain Immunoglobulin E-set (InterPro:IPR014756) | chr1:18565970-18569683 FORWARD
Medicago IMGA|AC185525_27.5 850 78.8 85.5 Peptidase aspartic, active site; RNA polymerase subunit, RPB5/RPB6-like chr08_pseudomolecule_IMGAG_V2 1995412-1985428 H EGN_Mt071002 20080227
Soybean Glyma07g12810.1 746 67.5 73.6  
3' Unigene BP070867 402 91.3 91.3 GNf047h02
5' Unigene AV429251 60.0 92.9 92.9 MWM194f02_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0590.120.nc length: 530 aa.
IPR009026 RNA polymerase subunit, Rpb5/Rpb6-like
method AccNumber shortName E-value location
superfamily SSF55287 RPB5-like 6.9e-08 431-524
no_ID  
Seg seg seg NA 232-243
253-276
505-517
superfamily SSF81296 E 4.7e-09 6-220
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0590.120.nc 530 0.075 0.274 0.037 0.779 _ 3
Wolf-PSORT
chr3.CM0590.120.nc	nucl 10, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0590.120.nc Not targeted -39.321 -4.297 -6.211 51.78% -28.813