Miyakogusa Predicted Gene

chr3.CM0396.280.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0396
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PQL8_VITVI 1204 67.0 78.9 (tr|A7PQL8) Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022116001 PE=4 SV=1
TAIR_pep AT2G27880.1 1099 61.4 73.7 | Symbols: | argonaute protein, putative / AGO, putative | chr2:11878565-11883789 FORWARD
Medicago IMGA|AC160838_11.5 941 52.3 69.8 Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi chr08_pseudomolecule_IMGAG_V2 25391911-25397439 E EGN_Mt071002 20080227
Soybean Glyma12g08860.1 1268 68.6 81.3  
Lotus Consensus KMC005469A_C01 1330 100.0 100.0 KMC005469A_c01
3' Unigene KMC005469A_C01 940 100.0 100.0 KMC005469A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0396.280.nd length: 970 aa.
IPR003100 Argonaute and Dicer protein, PAZ
method AccNumber shortName E-value location
HMMPfam PF02170 PAZ 4.5e-33 323-456
ProfileScan PS50821 PAZ 21.679 341-433
IPR003165 Stem cell self-renewal protein Piwi
HMMPfam PF02171 Piwi 5.1e-144 611-932
ProfileScan PS50822 PIWI 52.144 611-932
no_ID  
Gene3D 2.170.260.10 no description 7.8e-36 312-442
HMMPanther PTHR22891 EUKARYOTIC 4.8e-274 224-970
Seg seg seg NA 3-17
27-54
58-83
207-218
611-616
932-947
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0396.280.nd 970 0.462 0.251 0.000 0.216 C 4
Wolf-PSORT
chr3.CM0396.280.nd	mito 5.5, chlo 4, nucl 4, cyto_mito 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0396.280.nd Not targeted -50.369 -0.250 -13.602 75.10% -36.517