Miyakogusa Predicted Gene

chr3.CM0176.40.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0176
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QD89_VITVI 548 83.6 88.1 (tr|A7QD89) Chromosome undetermined scaffold_80, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035737001 PE=3 SV=1
TAIR_pep AT5G45190.1 565 52.2 64.4 | Symbols: | cyclin family protein | chr5:18295035-18297960 REVERSE
Medicago IMGA|AC174280_40.4 183 43.5 64.0 Cyclin, N-terminal chr01_pseudomolecule_IMGAG_V2 29643494-29646224 E EGN_Mt071002 20080227
Soybean Glyma15g41040.1 851 69.4 77.0  
Lotus Consensus KMC019736A_C01 618 100.0 100.0 KMC019736A_c01
3' Unigene KMC009607A_C01 967 99.6 99.6 KMC009607A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0176.40.nc length: 641 aa.
IPR006670 Cyclin
method AccNumber shortName E-value location
HMMSmart SM00385 no description 4.7e-08 65-167
180-265
IPR006671 Cyclin, N-terminal
Biological Process GO:0000074 regulation of progression through cell cycle    
HMMPfam PF00134 Cyclin_N 6e-14 31-174
IPR011028 Cyclin-like
superfamily SSF47954 Cyclin-like 1.1e-26 15-176
177-271
IPR012113 Cyclin, T/K
Biological Process GO:0000079 regulation of cyclin-dependent protein kinase activity    
Molecular Function GO:0019901 protein kinase binding    
Biological Process GO:0045449 regulation of transcription    
HMMPIR PIRSF036579 Cyclin, 2.6e-136 15-635
no_ID  
Coil coil coiled-coil NA 256-277
Gene3D 1.10.472.10 no description 5.4e-40 33-201
HMMPanther PTHR10026 CYCLIN 4.3e-157 59-540
HMMPanther PTHR10026:SF10 CYCLIN 4.3e-157 59-540
Seg seg seg NA 13-24
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0176.40.nc 641 0.026 0.485 0.080 0.866 _ 4
Wolf-PSORT
chr3.CM0176.40.nc	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0176.40.nc Not targeted -24.856 -0.836 -9.102 20.48% -14.918