Miyakogusa Predicted Gene

chr3.CM0160.970.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0160
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A9SVP8_PHYPA 344 91.0 97.6 (tr|A9SVP8) Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166815 PE=4 SV=1
TAIR_pep AT1G03840.1 348 93.4 99.4 | Symbols: MGP | MGP (MAGPIE); nucleic acid binding / protein binding / transcription factor/ zinc ion binding | chr1:967595-970057 REVERSE
Medicago IMGA|AC161241_14.5 332 89.8 94.6 Zinc finger, C2H2-type chr01_pseudomolecule_IMGAG_V2 20604159-20608049 E EGN_Mt071002 20080227
Soybean Glyma13g36960.1 412 72.6 75.8  
3' Unigene AV772572 85.7 93.2 93.2 MPD038a11_f
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0160.970.nd length: 263 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00096 zf-C2H2 0.015 58-80
134-156
161-182
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.305 58-80
ScanRegExp PS00028 ZINC_FINGER_C2H2_1 NA 60-80
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 3.9e-11 97-175
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 3.9e-11 97-175
Seg seg seg NA 14-27
196-205
superfamily SSF57667 C2H2 0.0081 53-89
110-161
162-183
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0160.970.nd 263 0.889 0.023 0.023 0.539 C 4
Wolf-PSORT
chr3.CM0160.970.nd	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0160.970.nd Not targeted -23.596 -0.032 -4.075 18.33% -19.488