Miyakogusa Predicted Gene

chr3.CM0135.380.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0135
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P2V8_VITVI 637 46.5 58.5 (tr|A7P2V8) Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030203001 PE=4 SV=1
TAIR_pep AT5G23150.1 414 54.7 67.2 | Symbols: HUA2 | HUA2 (ENHANCER OF AG-4 2) | chr5:7786176-7792083 FORWARD
Medicago IMGA|AC146777_22.5 975 64.9 71.9 PWWP; Regulation of nuclear pre-mRNA protein chr04_pseudomolecule_IMGAG_V2 32034456-32026199 E EGN_Mt071002 20080227
Soybean Glyma12g02980.1 1007 62.3 69.6  
Lotus Consensus KMC000600A_C01 46.1 100.0 100.0 KMC000600A_c01
3' Unigene BP077528 735 97.8 97.8 MR020e09_f
5' Unigene AV408367 854 100.0 100.0 MWL040d02_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0135.380.nd length: 1111 aa.
IPR006569 Regulation of nuclear pre-mRNA protein
method AccNumber shortName E-value location
HMMSmart SM00582 no description 9.5e-44 613-744
IPR011009 Protein kinase-like
superfamily SSF56112 Protein 1.3e-05 9-997
no_ID  
HMMPanther PTHR23213 FORMIN-RELATED 1.2e-08 410-446
880-986
HMMPanther PTHR23213:SF18 FORMIN-RELATED 1.2e-08 410-446
880-986
Seg seg seg NA 256-269
273-279
422-432
445-456
695-712
902-962
968-988
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0135.380.nd 1111 0.243 0.096 0.025 0.875 _ 2
Wolf-PSORT
chr3.CM0135.380.nd	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0135.380.nd Not targeted -33.681 -0.341 -3.265 38.65% -30.075