Miyakogusa Predicted Gene

chr3.CM0127.630.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0127
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL O24307_PEA 1050 62.2 69.2 (tr|O24307) Topoisomerase I OS=Pisum sativum GN=top1 PE=2 SV=1
TAIR_pep AT5G55310.1 851 72.9 82.5 | Symbols: TOP1, TOP1alpha | TOP1alpha (TOPOISOMERASE I) | chr5:22447615-22451816 REVERSE
Medicago IMGA|CU013532_30.4 872 75.9 82.0 DNA breaking-rejoining enzyme, catalytic core chr03_pseudomolecule_IMGAG_V2 13910887-13919779 H EGN_Mt071002 20080227
Soybean Glyma12g01630.1 1236 70.8 77.2  
Lotus Consensus KMC000440A_C02 718 99.5 99.5 KMC000440A_c02
3' Unigene KMC000440A_C02 335 100.0 100.0 KMC000440A_c02
5' Unigene AV421861 52.0 92.1 92.1 MWM001a12_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0127.630.nc length: 898 aa.
IPR001631 DNA topoisomerase I, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR00416 EUTPISMRASEI 2e-47 495-504
611-630
634-648
656-672
714-728
851-862
ScanRegExp PS00176 TOPOISOMERASE_I_EUK 8e-5 844-862
IPR008336 DNA topoisomerase I, DNA binding, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF02919 Topoisom_I_N 2.7e-158 354-566
IPR011010 DNA breaking-rejoining enzyme, catalytic core
Molecular Function GO:0003677 DNA binding    
superfamily SSF56349 DNA 1.8e-87 568-898
IPR013499 DNA topoisomerase I, C-terminal, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMSmart SM00435 no description 1.9e-265 495-871
IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase (ATP-hydrolyzing) activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF01028 Topoisom_I 4.2e-144 569-803
no_ID  
Coil coil coiled-coil NA 445-473
767-802
818-846
Gene3D 1.10.132.10 no description 2e-66 718-898
Gene3D 2.170.11.10 no description 7.4e-57 351-567
Gene3D 3.90.15.10 no description 1.7e-60 568-716
HMMPanther PTHR10290 DNA 4.8e-281 346-898
Seg seg seg NA 139-147
168-183
277-284
294-317
321-344
445-474
800-814
superfamily SSF56741 Eukaryotic 8.5e-95 340-567
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0127.630.nc 898 0.136 0.094 0.003 0.848 _ 2
Wolf-PSORT
chr3.CM0127.630.nc	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0127.630.nc Twilight zone -9.766 -0.607 -4.513 3.60% -4.646