Miyakogusa Predicted Gene

chr3.CM0127.50.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0127
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5B3L6_VITVI 583 44.1 58.3 (tr|A5B3L6) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029609 PE=4 SV=1
TAIR_pep AT5G16680.1 414 40.1 56.0 | Symbols: | PHD finger family protein | chr5:5467537-5472959 REVERSE
Medicago IMGA|CU302334_5.4 1040 52.9 62.9 Aldehyde dehydrogenase; Zinc finger, FYVE/PHD-type chr05_pseudomolecule_IMGAG_V2 1012576-1019588 E EGN_Mt071002 20080227
Soybean Glyma11g11720.1 1592 60.0 68.9  
Lotus Consensus KMC001069A_C01 418 100.0 100.0 KMC001069A_c01
3' Unigene KMC001069A_C01 983 98.5 98.5 KMC001069A_c01
5' Unigene AV427623 56.0 90.9 90.9 MWM084h12_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0127.50.nc length: 1339 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 no description 0.0062 276-323
IPR011011 Zinc finger, FYVE/PHD-type
Molecular Function GO:0008270 zinc ion binding    
superfamily SSF57903 FYVE/PHD 2e-10 269-330
no_ID  
Gene3D 3.30.40.10 no description 2.9e-08 270-336
HMMPanther PTHR22880 FALZ-RELATED 1.8e-08 277-361
HMMPanther PTHR22880:SF4 BROMODOMAIN 1.8e-08 277-361
Seg seg seg NA 47-58
260-268
440-448
1153-1165
1301-1311
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0127.50.nc 1339 0.215 0.221 0.043 0.441 _ 4
Wolf-PSORT
chr3.CM0127.50.nc	nucl 9, chlo 2, cyto 1, vacu 1, pero 1, chlo_mito 1, cyto_pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0127.50.nc Not targeted -84.650 -27.717 -10.713 99.40% -46.219