Miyakogusa Predicted Gene

chr3.CM0127.280.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0127
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PB81_VITVI 759 55.0 67.5 (tr|A7PB81) Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00013985001 PE=4 SV=1
TAIR_pep AT5G16730.1 510 48.3 63.0 | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62148.1); contains InterPro domain Spectrin repeat (InterPro:IPR002017) | chr5:5497893-5500778 FORWARD
Medicago IMGA|AC174318_26.4 887 63.0 70.9 Retrovirus capsid, N-terminal core; Prefoldin chr04_pseudomolecule_IMGAG_V2 21058583-21062716 E EGN_Mt071002 20080227
Soybean Glyma12g01950.1 947 64.5 71.9  
Lotus Consensus KMC006268A_C01 555 100.0 100.0 KMC006268A_c01
3' Unigene BP075488 674 95.1 95.1 GNLf011h03
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0127.280.nc length: 837 aa.
IPR009053 Prefoldin
method AccNumber shortName E-value location
superfamily SSF46579 Prefoldin 0.0092 463-547
IPR011072 Protein kinase PKN/PRK1, effector
superfamily SSF46585 Effector 0.0045 292-381
no_ID  
BlastProDom PD023692 Q803L6_BRARE_Q803L6; 0.005 105-301
Coil coil coiled-coil NA 83-146
161-182
252-304
311-332
339-374
381-423
427-507
550-634
HMMPanther PTHR23160 MYOSIN 1.2e-21 1-831
Seg seg seg NA 22-33
43-57
84-95
310-322
433-446
573-586
643-661
706-719
737-753
763-785
808-831
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0127.280.nc 837 0.972 0.045 0.006 0.050 C 1
Wolf-PSORT
chr3.CM0127.280.nc	chlo 8, nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0127.280.nc Not targeted -32.710 -0.440 -6.664 36.45% -25.606