Miyakogusa Predicted Gene

chr3.CM0115.140.nd

Related links:

GeneModel
GBrowse(chr3.CM0115.140.nd)

Predicted Sequence Links:

Genome Sequence: CM0115

Full length sequence(184113 bp)
Sequence Cut

Init: Term:
reverse complement

Proteome Analysis:

Peptide data [green seed] Lj proteome database

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	O24470_PEA	1095	80.7	90.1	(tr\|O24470) Lipoxygenase OS=Pisum sativum GN=Lox1:Ps:1 PE=3 SV=1
TAIR_pep	AT1G55020.1	812	60.4	76.7	\| Symbols: LOX1 \| LOX1 (Lipoxygenase 1); lipoxygenase \| chr1:20529465-20533810 FORWARD
Medicago	IMGA\|AC140032_7.4	1098	81.4	90.6	Lipoxygenase chr08_pseudomolecule_IMGAG_V2 5602349-5598419 F EGN_Mt071002 20080227
Soybean	Glyma08g20220.1	1045	77.5	88.9
Lotus Consensus	KMC019310A_C01	1009	88.1	88.1	KMC019310A_c01
3' Unigene	KMC002772A_C01	955	100.0	100.0	KMC002772A_c01
5' Unigene	R_KMC000789A_C01	648	89.7	89.7	R_KMC000789A_c01

A list of protein families, domains and functional sites (searches in InterPro)

IPR000907	Lipoxygenase
chr3.CM0115.140.nd				length: 704 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005506	iron ion binding
Biological Process	GO:0006118	electron transport
Molecular Function	GO:0016165	lipoxygenase activity
HMMPanther	PTHR11771	LIPOXYGENASE	0	67-704
IPR001246	Plant lipoxygenase
Molecular Function	GO:0005506	iron ion binding
Biological Process	GO:0006118	electron transport
Molecular Function	GO:0016165	lipoxygenase activity
FPrintScan	PR00468	PLTLPOXGNASE	1.6e-62	73-92 141-162 186-202 225-244 290-314 612-626
IPR013819	Lipoxygenase, C-terminal
FPrintScan	PR00087	LIPOXYGENASE	3.7e-25	337-354 355-372 375-395
HMMPfam	PF00305	Lipoxygenase	0	24-689
ScanRegExp	PS00081	LIPOXYGENASE_2	8e-5	388-398
ScanRegExp	PS00711	LIPOXYGENASE_1	8e-5	361-375
superfamily	SSF48484	Lipoxigenase	1.2e-264	61-698
no_ID
Gene3D	1.20.245.10	no description	3.1e-146	358-704
Gene3D	3.10.450.60	no description	7.8e-51	224-357
Gene3D	4.10.372.10	no description	7.8e-28	135-223
Gene3D	4.10.375.10	no description	2.1e-20	58-133
HMMPanther	PTHR11771:SF2	LIPOXYGENASE	0	67-704

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr3.CM0115.140.nd	704	0.774	0.349	0.006	0.055	C	3

Wolf-PSORT

chr3.CM0115.140.nd	chlo 6, mito 4, nucl 3

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr3.CM0115.140.nd	Not targeted	-38.535	-3.058	-2.281	49.95%	-33.196