| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | A5BQ96_VITVI | 123 | 78.7 | 85.3 | (tr|A5BQ96) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040408 PE=4 SV=1 |
| TAIR_pep | AT2G21060.1 | 103 | 68.4 | 73.7 | | Symbols: ATGRP2B | ATGRP2B (GLYCINE-RICH PROTEIN 2B); nucleic acid binding | chr2:9044064-9044669 REVERSE |
| Medicago | IMGA|AC160096_24.5 | 102 | 57.7 | 79.5 | Zinc finger, CCHC-type; Cold shock protein chr08_pseudomolecule_IMGAG_V2 17625033-17625900 E EGN_Mt071002 20080227 |
| Soybean | Glyma12g03470.11 | 126 | 76.3 | 89.5 | |
| 3' Unigene | AV779811 | 529 | 98.3 | 98.3 | MPDL065e07_f |
| 5' Unigene | R_KMC000701A_C01 | 751 | 100.0 | 100.0 | R_KMC000701A_c01 |
| chr3.CM0112.180.nd | length: 207 aa. | |||
| IPR001878 | Zinc finger, CCHC-type | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| FPrintScan | PR00939 | C2HCZNFINGER | 0.0076 | 149-158 158-166 |
| HMMPfam | PF00098 | zf-CCHC | 7.7e-08 | 149-166 187-204 |
| HMMSmart | SM00343 | no description | 9.3e-06 | 150-166 188-204 |
| ProfileScan | PS50158 | ZF_CCHC | 11.482 | 151-164 189-204 |
| IPR002059 | Cold-shock protein, DNA-binding | |||
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| BlastProDom | PD000621 | Q84UR8_EEEEE_Q84UR8; | 6e-12 | 23-70 |
| FPrintScan | PR00050 | COLDSHOCK | 1.9e-14 | 8-23 29-38 44-62 |
| HMMPfam | PF00313 | CSD | 1.3e-33 | 5-72 |
| ScanRegExp | PS00352 | COLD_SHOCK | 8e-5 | 19-38 |
| IPR011129 | Cold shock protein | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMSmart | SM00357 | no description | 8.5e-26 | 7-72 |
| no_ID | ||||
| Gene3D | 2.40.50.140 | no description | 3.6e-15 | 5-72 |
| Gene3D | 4.10.60.10 | no description | 0.00017 | 137-203 |
| HMMPanther | PTHR23002 | ZINC | 1.3e-22 | 59-207 |
| HMMPanther | PTHR23002:SF5 | GLYCINE-RICH | 1.3e-22 | 59-207 |
| Seg | seg | seg | NA | 81-149 165-196 |
| superfamily | SSF50249 | Nucleic | 1.4e-21 | 4-71 |
| superfamily | SSF57756 | Retrovirus | 5.4e-12 | 137-207 |
| Name | Length | cTP | mTP | SP | other | Loc. | RC |
|---|---|---|---|---|---|---|---|
| chr3.CM0112.180.nd | 207 | 0.041 | 0.178 | 0.126 | 0.900 | _ | 2 |
chr3.CM0112.180.nd mito 7, nucl 5, cyto 1, plas 1, cyto_plas 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| chr3.CM0112.180.nd | Not targeted | -21.306 | -0.903 | -1.235 | 14.77% | -19.168 |