Miyakogusa Predicted Gene

chr3.CM0111.220.nc

Related links:

GeneModel
GBrowse(chr3.CM0111.220.nc)

Predicted Sequence Links:

Genome Sequence: CM0111

Full length sequence(337020 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A7P1Y9_VITVI	814	63.6	75.0	(tr\|A7P1Y9) Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027802001 PE=4 SV=1
TAIR_pep	AT1G53300.1	723	63.9	74.5	\| Symbols: TTL1 \| TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1); binding \| chr1:19883394-19886043 FORWARD
Medicago	IMGA\|AC166314_13.4	397	43.6	62.5	Thioredoxin domain 2; Thioredoxin fold chr05_pseudomolecule_IMGAG_V2 21150892-21146782 F EGN_Mt071002 20080227
Soybean	Glyma13g34610.1	998	74.9	81.7
Lotus Consensus	KMC001102A_C01	333	98.9	98.9	KMC001102A_c01
3' Unigene	KMC001102A_C01	1209	97.9	97.9	KMC001102A_c01
5' Unigene	R_KMC000820A_C01	500	100.0	100.0	R_KMC000820A_c01

A list of protein families, domains and functional sites (searches in InterPro)

IPR001440	Tetratricopeptide TPR_1
chr3.CM0111.220.nc				length: 646 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF00515	TPR_1	0.29	446-479 480-513
IPR008940	Protein prenyltransferase
superfamily	SSF48439	Protein	1.4e-28	277-528
IPR012336	Thioredoxin-like fold
superfamily	SSF52833	Thioredoxin-like	1.2e-18	541-646
IPR013026	Tetratricopeptide region
HMMSmart	SM00028	no description	14	174-207 208-241 366-399 412-445 446-479 480-513
ProfileScan	PS50005	TPR	5.871	174-207 208-241 366-399 412-445 446-479 480-513
ProfileScan	PS50293	TPR_REGION	24.217	174-513
IPR013105	Tetratricopeptide TPR_2
HMMPfam	PF07719	TPR_2	0.0023	174-207 208-241 366-399 412-445
IPR013766	Thioredoxin domain
HMMPfam	PF00085	Thioredoxin	3.3e-08	543-643
no_ID
Gene3D	1.25.40.10	no description	1.9e-30	174-265 280-409 410-529
Gene3D	3.40.30.10	no description	2.4e-17	542-646
HMMPanther	PTHR11821	DNAJ/HSP40	8e-175	100-564
HMMPanther	PTHR11821:SF6	DNAJ-RELATED	8e-175	100-564
ProfileScan	PS50223	THIOREDOXIN_2	12.800	544-643
Seg	seg	seg	NA	41-53 150-158 223-237
superfamily	SSF48452	TPR-like	1.1e-21	170-265

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr3.CM0111.220.nc	646	0.747	0.034	0.002	0.535	C	4

Wolf-PSORT

chr3.CM0111.220.nc	nucl 6, cyto 4, chlo 1, mito 1, plas 1, vacu 1, chlo_mito 1, mito_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr3.CM0111.220.nc	Not targeted	-29.903	-1.187	-1.647	30.31%	-27.069