Miyakogusa Predicted Gene

chr3.CM0091.630.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0091
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q10FE7_ORYSJ 156 81.4 94.2 (tr|Q10FE7) Retrotransposon protein, putative, Ty1-copia subclass, expressed (Os03g0670700 protein) OS=Oryza sativa subsp. japonica GN=Os03g0670700 PE=4 SV=1
TAIR_pep AT2G21660.2 146 77.6 90.6 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding | chr2:9272557-9273396 REVERSE
Medicago IMGA|AC134242_17.5 161 87.2 96.5 RNA-binding region RNP-1 (RNA recognition motif) chr04_pseudomolecule_IMGAG_V2 19467865-19466799 F EGN_Mt071002 20080227
Soybean Glyma06g01470.1 153 81.4 96.5  
Lotus Consensus KMC009175A_C01 178 83.5 83.5 KMC009175A_c01
3' Unigene AV771422 464 94.0 94.0 MPD021a07_f
5' Unigene AV410311 119 84.9 84.9 MWL070g09_r
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM0091.630.nd length: 163 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.4e-30 10-81
HMMSmart SM00360 no description 5e-28 9-82
ProfileScan PS50102 RRM 19.536 8-86
no_ID  
Gene3D 3.30.70.330 no description 3e-29 8-118
HMMPanther PTHR10432 RNA-BINDING 4.3e-59 2-157
HMMPanther PTHR10432:SF31 GLYCINE-RICH 4.3e-59 2-157
Seg seg seg NA 87-160
superfamily SSF54928 RNA-binding 4.7e-27 8-118
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM0091.630.nd 163 0.104 0.108 0.205 0.728 _ 3
Wolf-PSORT
chr3.CM0091.630.nd	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM0091.630.nd Not targeted -20.921 0 -7.782 14.22% -13.140