Miyakogusa Predicted Gene
- chr2.LjT47G24.250.nd
- Related links:
- Predicted Sequence Links:
- Genome Sequence: LjT47G24
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q6ZIQ1_ORYSJ |
276 |
84.1 |
94.7 |
(tr|Q6ZIQ1) Putative eukaryotic peptide chain release factor subunit 1-3 (ERF1-3) (Putative uncharacterized protein) (Os07g0587400 protein) OS=Oryza sativa subsp. japonica GN=OJ1047_C01.9 PE=4 SV=1 |
|---|
| TAIR_pep |
AT3G26618.1 |
261 |
82.1 |
91.4 |
| Symbols: ERF1-3 | ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3); translation release factor | chr3:9790091-9791398 FORWARD |
|---|
| Medicago |
IMGA|AC155919_33.5 |
279 |
87.6 |
96.6 |
Peptide chain release factor eRF/aRF subunit 1 chr06_pseudomolecule_IMGAG_V2 15045532-15050174 E EGN_Mt071002 20080227 |
|---|
| Soybean |
Glyma09g29600.1 |
298 |
92.1 |
98.0 |
|
|---|
| Lotus Consensus |
KMC003256A_C01 |
60.0 |
80.4 |
80.4 |
KMC003256A_c01 |
|---|
| 3' Unigene |
BP061636 |
898 |
98.6 |
98.6 |
GENf076g11 |
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr2.LjT47G24.250.nd |
length: 151 aa. |
| IPR004403 |
Peptide chain release factor eRF/aRF subunit 1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005737 |
cytoplasm |
|
|
| Biological Process |
GO:0006415 |
translational termination |
|
|
| Molecular Function |
GO:0016149 |
translation release factor activity, codon specific |
|
|
| HMMPanther |
PTHR10113 |
PEPTIDE |
1.6e-79 |
1-151 |
| IPR005142 |
eRF1 domain 3 |
| HMMPfam |
PF03465 |
eRF1_3 |
2.1e-55 |
2-133 |
| no_ID |
|
| Gene3D |
3.30.1330.30 |
no description |
1.4e-51 |
1-149 |
| HMMPanther |
PTHR10113:SF1 |
EUKARYOTIC |
1.6e-79 |
1-151 |
| superfamily |
SSF55315 |
L30e-like |
7e-46 |
1-137 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr2.LjT47G24.250.nd |
151 |
0.044 |
0.162 |
0.174 |
0.904 |
_ |
2
|
- Wolf-PSORT
chr2.LjT47G24.250.nd chlo 4, nucl 4, extr 2, cysk 2, cyto_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr2.LjT47G24.250.nd |
Not targeted |
-48.467 |
-0.508 |
-9.248 |
71.58% |
-38.711
|