Miyakogusa Predicted Gene

chr2.LjT40P05.10.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT40P05
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QG27_VITVI 440 43.3 58.9 (tr|A7QG27) Chromosome undetermined scaffold_91, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037676001 PE=4 SV=1
TAIR_pep AT4G25610.1 360 36.8 51.6 | Symbols: | zinc finger (C2H2 type) family protein | chr4:13063810-13066869 FORWARD
Medicago IMGA|AC202314_5.4 609 48.8 61.3 hypothetical protein chr01_pseudomolecule_IMGAG_V2 25955496-25961750 E EGN_Mt071002 20080227
Soybean Glyma16g30100.1 737 58.9 68.8  
A list of protein families, domains and functional sites (searches in InterPro)
chr2.LjT40P05.10.nd length: 684 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00096 zf-C2H2 0.0033 85-107
ProfileScan PS50157 ZINC_FINGER_C2H2_2 8.704 85-112
ScanRegExp PS00028 ZINC_FINGER_C2H2_1 8e-5 87-108
no_ID  
Coil coil coiled-coil NA 261-306
308-336
Seg seg seg NA 272-283
286-304
657-668
superfamily SSF57667 C2H2 0.00059 78-110
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.LjT40P05.10.nd 684 0.021 0.133 0.048 0.964 _ 1
Wolf-PSORT
chr2.LjT40P05.10.nd	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.LjT40P05.10.nd Not targeted -28.594 -1.383 -1.610 27.59% -25.601