Miyakogusa Predicted Gene

chr2.CM0641.310.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0641
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QEA7_VITVI 446 75.2 86.5 (tr|A7QEA7) Chromosome chr1 scaffold_84, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036930001 PE=4 SV=1
TAIR_pep AT2G03150.1 392 58.5 73.8 | Symbols: EMB1579 | EMB1579 (EMBRYO DEFECTIVE 1579); binding | chr2:952310-959001 FORWARD
Medicago IMGA|CT573505_18.4 643 57.3 65.3 Calcium-binding EF-hand chr05_pseudomolecule_IMGAG_V2 16895956-16905220 E EGN_Mt071002 20080227
Soybean Glyma02g12230.1 1587 60.2 66.6  
3' Unigene AV764811 480 100.0 100.0 MWM014d02_f
5' Unigene R_KMC001362A_C01 301 100.0 100.0 R_KMC001362A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0641.310.nc length: 1443 aa.
IPR002048 Calcium-binding EF-hand
method AccNumber shortName E-value location
Molecular Function GO:0005509 calcium ion binding    
BlastProDom PD000012 Q7R9F4_PLAYO_Q7R9F4; 0.0003 1374-1440
HMMPfam PF00036 efhand 0.0071 1376-1404
ProfileScan PS50222 EF_HAND_2 11.584 1372-1407
no_ID  
Coil coil coiled-coil NA 360-392
Gene3D 1.10.238.10 no description 3e-06 1375-1440
HMMPanther PTHR14304 P30 1.1e-219 157-348
369-395
445-736
955-1361
HMMPanther PTHR14304:SF2 UNCHARCTERIZED 1.1e-219 157-348
369-395
445-736
955-1361
Seg seg seg NA 2-22
199-214
337-395
707-718
779-794
845-857
882-900
939-959
1005-1026
1092-1116
1126-1147
1188-1202
1236-1257
1274-1294
1353-1364
superfamily SSF47473 EF-hand 4.7e-10 615-1441
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0641.310.nc 1443 0.028 0.802 0.017 0.480 M 4
Wolf-PSORT
chr2.CM0641.310.nc	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0641.310.nc Not targeted -25.870 -5.097 -10.261 22.30% -10.511