Miyakogusa Predicted Gene

chr2.CM0405.110.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0405
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A3CIN1_ORYSJ 173 82.3 91.7 (tr|A3CIN1) Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_035153 PE=4 SV=1
TAIR_pep AT3G55460.1 155 81.3 91.2 | Symbols: SCL30 | SCL30 (SC35-like splicing factor 30); RNA binding | chr3:20572001-20574479 FORWARD
Medicago IMGA|CR962128_15.4 182 85.9 92.9 RNA-binding region RNP-1 (RNA recognition motif) chr05_pseudomolecule_IMGAG_V2 28226391-28230385 H EGN_Mt071002 20080227
Soybean Glyma02g41510.2 243 61.3 65.0  
Lotus Consensus KMC004654A_C01 599 100.0 100.0 KMC004654A_c01
3' Unigene KMC004654A_C01 652 99.7 99.7 KMC004654A_c01
5' Unigene AV427627 420 100.0 100.0 MWM084e02_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0405.110.nd length: 324 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.8e-19 89-160
HMMSmart SM00360 no description 2.2e-19 88-161
ProfileScan PS50102 RRM 16.517 86-164
no_ID  
Gene3D 3.30.70.330 no description 1.1e-23 88-203
HMMPanther PTHR23147 SERINE/ARGININE 1.4e-54 50-323
Seg seg seg NA 43-82
186-229
243-257
301-322
superfamily SSF54928 RNA-binding 3.8e-23 51-194
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0405.110.nd 324 0.700 0.553 0.008 0.032 C 5
Wolf-PSORT
chr2.CM0405.110.nd	nucl 6, mito 4, chlo 3, cyto_nucl 3, cysk_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0405.110.nd Not targeted -32.607 0 -0.462 36.22% -32.145