Miyakogusa Predicted Gene

chr2.CM0304.780.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0304
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5AK60_VITVI 256 50.7 60.1 (tr|A5AK60) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009283 PE=3 SV=1
TAIR_pep AT4G11660.1 226 40.9 50.6 | Symbols: HSFB2B, AT-HSFB2B | AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor | chr4:7043000-7044221 FORWARD
Medicago IMGA|CU326391_6.4 295 47.9 56.1 HSF/ETS, DNA-binding chr05_pseudomolecule_IMGAG_V2 2693876-2695810 E EGN_Mt071002 20080227
Soybean Glyma11g02800.2 310 52.3 57.4  
Lotus Consensus KMC005579A_C01 642 100.0 100.0 KMC005579A_c01
3' Unigene KMC005579A_C01 1039 100.0 100.0 KMC005579A_c01
5' Unigene AV415115 502 100.0 100.0 MWM102g08_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0304.780.nc length: 336 aa.
IPR000232 Heat shock factor (HSF)-type, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
BlastProDom PD001788 HSF7_ARATH_Q9T0D3; 4e-36 26-105
FPrintScan PR00056 HSFDOMAIN 3.4e-22 23-46
61-73
74-86
HMMPfam PF00447 HSF_DNA-bind 1.4e-44 21-224
HMMSmart SM00415 no description 3.2e-61 19-112
ScanRegExp PS00434 HSF_DOMAIN 8e-5 62-86
no_ID  
Gene3D 1.10.10.10 no description 2e-37 17-112
HMMPanther PTHR10015 HEAT 2.8e-68 28-226
HMMPanther PTHR10015:SF7 HEAT 2.8e-68 28-226
ProfileScan PS50140 HSF_ETS 23.687 23-90
Seg seg seg NA 115-145
151-165
179-193
252-262
281-295
296-306
superfamily SSF46785 "Winged 4.1e-39 17-112
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0304.780.nc 336 0.243 0.096 0.092 0.862 _ 2
Wolf-PSORT
chr2.CM0304.780.nc	nucl 9, vacu 1, cysk 1, golg 1, cyto_pero 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0304.780.nc Not targeted -58.068 0 -12.605 86.53% -45.462