Miyakogusa Predicted Gene

chr2.CM0168.280.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0168
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q10QD1_ORYSJ 783 65.6 72.2 (tr|Q10QD1) Peptidyl-prolyl cis-trans isomerase OS=Oryza sativa subsp. japonica GN=LOC_Os03g10400 PE=3 SV=1
TAIR_pep AT5G67530.1 761 62.8 70.6 | Symbols: | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | chr5:26958486-26961104 FORWARD
Medicago IMGA|CT027662_30.5 681 68.4 71.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin type chr05_pseudomolecule_IMGAG_V2 5248585-5245890 E EGN_Mt071002 20080227
Soybean Glyma01g40170.1 899 73.4 77.5  
3' Unigene BP036426 159 94.4 94.4 MFB033e10_f
5' Unigene AV427213 127 96.1 96.1 MWM077h11_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0168.280.nc length: 601 aa.
IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
method AccNumber shortName E-value location
Biological Process GO:0006457 protein folding    
FPrintScan PR00153 CSAPPISMRASE 6.5e-25 364-379
390-402
433-448
448-460
461-476
HMMPfam PF00160 Pro_isomerase 8.6e-56 350-502
ProfileScan PS50072 CSA_PPIASE_2 32.667 354-501
ScanRegExp PS00170 CSA_PPIASE_1 8e-5 385-402
superfamily SSF50891 Cyclophilin 3.2e-63 349-502
IPR003613 U box
Cellular Component GO:0000151 ubiquitin ligase complex    
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Biological Process GO:0016567 protein ubiquitination    
HMMSmart SM00504 no description 1.6e-10 39-101
no_ID  
Gene3D 2.40.100.10 no description 2.3e-57 350-502
Gene3D 3.30.40.10 no description 0.0011 40-94
HMMPanther PTHR11071 CYCLOPHILIN 4.9e-117 351-530
HMMPanther PTHR11071:SF38 CYCLOPHILIN-10 4.9e-117 351-530
Seg seg seg NA 222-226
227-246
278-292
401-411
467-478
510-530
545-556
572-591
superfamily SSF57850 RING/U-box 0.0056 40-94
101-160
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0168.280.nc 601 0.037 0.180 0.085 0.944 _ 2
Wolf-PSORT
chr2.CM0168.280.nc	nucl 8, cyto 3, mito 1, pero 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0168.280.nc Not targeted -31.132 -0.086 -4.628 32.95% -26.418