Miyakogusa Predicted Gene

chr2.CM0153.40.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0153
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PES9_VITVI 605 47.4 56.5 (tr|A7PES9) Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016774001 PE=4 SV=1
TAIR_pep AT4G13350.2 356 51.8 60.9 | Symbols: | human Rev interacting-like protein-related / hRIP protein-related | chr4:7770166-7773317 REVERSE
Medicago IMGA|AC139842_11.5 887 62.9 68.6 Arf GTPase activating protein chr06_pseudomolecule_IMGAG_V2 16890071-16898954 E EGN_Mt071002 20080227
Soybean Glyma07g09750.1 688 65.7 71.3  
Lotus Consensus KMC010834A_C01 172 100.0 100.0 KMC010834A_c01
3' Unigene KMC000902A_C03 983 95.6 95.6 KMC000902A_c03
5' Unigene R_KMC000958A_C01 236 100.0 100.0 R_KMC000958A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0153.40.nc length: 782 aa.
IPR001164 Arf GTPase activating protein
method AccNumber shortName E-value location
Biological Process GO:0043087 regulation of GTPase activity    
FPrintScan PR00405 REVINTRACTNG 4.7e-10 23-42
42-59
60-81
HMMPfam PF01412 ArfGap 1.4e-22 11-129
HMMSmart SM00105 no description 1.1e-15 11-129
ProfileScan PS50115 ARFGAP 17.086 11-129
no_ID  
HMMPanther PTHR23180 CENTAURIN/ARF 4.7e-98 10-127
145-388
429-469
485-615
HMMPanther PTHR23180:SF12 HIV-1 4.7e-98 10-127
145-388
429-469
485-615
Seg seg seg NA 165-181
298-322
410-428
700-705
superfamily SSF57863 Pyk2-associated 7.5e-35 9-124
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0153.40.nc 782 0.127 0.177 0.037 0.797 _ 2
Wolf-PSORT
chr2.CM0153.40.nc	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0153.40.nc Not targeted -50.439 -0.034 -12.530 75.23% -37.876