Miyakogusa Predicted Gene

chr2.CM0081.330.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0081
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PMK0_VITVI 1225 56.8 68.3 (tr|A7PMK0) Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020851001 PE=4 SV=1
TAIR_pep AT5G15020.1 1104 51.5 64.7 | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01320.1); similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40976.1); similar to hypothetical protein OsJ_000071 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10246.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14871.1); contains InterPro domain Histone deacetylase interacting (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) | chr5:4859411-4865572 REVERSE
Medicago IMGA|AC137832_22.5 1611 72.3 78.1 Paired amphipathic helix chr06_pseudomolecule_IMGAG_V2 948748-939769 E EGN_Mt071002 20080227
Soybean Glyma19g01920.1 1810 77.2 82.9  
3' Unigene AV775082 593 98.2 98.2 MPD077g04_f
5' Unigene AV415593 58.0 91.1 91.1 MWM113d03_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0081.330.nc length: 1158 aa.
IPR003822 Paired amphipathic helix
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02671 PAH 1.7e-12 75-121
159-205
339-385
IPR013194 Histone deacetylase interacting
HMMPfam PF08295 HDAC_interact 2.6e-60 451-551
HMMSmart SM00761 no description 4e-54 451-551
no_ID  
Coil coil coiled-coil NA 412-433
524-545
Gene3D 1.20.1160.11 no description 3.5e-06 51-125
135-209
316-389
HMMPanther PTHR12346 SIN3B-RELATED 4.8e-262 46-281
323-387
426-780
1072-1105
Seg seg seg NA 35-47
278-294
514-525
649-660
982-998
1015-1028
superfamily SSF47762 PAH2 2.7e-15 132-207
51-125
316-389
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0081.330.nc 1158 0.092 0.582 0.054 0.403 M 5
Wolf-PSORT
chr2.CM0081.330.nc	nucl 7, pero 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0081.330.nc Not targeted -50.096 -6.378 -6.133 74.61% -37.585