Miyakogusa Predicted Gene

chr2.CM0081.230.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0081
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PMK7_VITVI 731 84.9 92.9 (tr|A7PMK7) Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020858001 PE=4 SV=1
TAIR_pep AT1G74910.2 712 81.8 92.0 | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28139431-28142117 REVERSE
Medicago IMGA|AC141109_38.5 807 93.5 96.4 Nucleotidyl transferase; Trimeric LpxA-like chr04_pseudomolecule_IMGAG_V2 27108701-27102338 E EGN_Mt071002 20080227
Soybean Glyma19g06900.1 758 87.7 93.5  
3' Unigene BP049746 466 98.4 98.4 SPD072c10_f
5' Unigene AV408375 278 100.0 100.0 MWL040b08_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0081.230.nc length: 414 aa.
IPR001451 Bacterial transferase hexapeptide repeat
method AccNumber shortName E-value location
Molecular Function GO:0008415 acyltransferase activity    
HMMPfam PF00132 Hexapep 33 293-310
311-328
334-351
IPR005835 Nucleotidyl transferase
Biological Process GO:0009058 biosynthesis    
Molecular Function GO:0016779 nucleotidyltransferase activity    
HMMPfam PF00483 NTP_transferase 2.9e-19 8-195
IPR011004 Trimeric LpxA-like
superfamily SSF51161 Trimeric 1.2e-16 311-404
no_ID  
Gene3D 2.160.10.10 no description 2.3e-09 296-365
Gene3D 3.90.550.10 no description 4e-38 9-284
HMMPanther PTHR22572 SUGAR-1-PHOSPHATE 8.6e-141 18-408
HMMPanther PTHR22572:SF15 MANNOSE-1-PHOSPHATE 8.6e-141 18-408
superfamily SSF53448 Nucleotide-diphospho-sugar 2.8e-52 5-310
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0081.230.nc 414 0.221 0.074 0.096 0.724 _ 3
Wolf-PSORT
chr2.CM0081.230.nc	cyto 9, nucl 2, cysk 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0081.230.nc Not targeted -55.580 -2.683 -19.907 83.34% -32.990