Miyakogusa Predicted Gene

chr2.CM0065.210.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0065
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5AXA8_VITVI 834 79.7 91.3 (tr|A5AXA8) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003522 PE=4 SV=1
TAIR_pep AT2G03820.1 676 65.6 81.0 | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165146-1166696 REVERSE
Medicago IMGA|CR940306_20.5 800 79.7 89.1 NMD3 chr03_pseudomolecule_IMGAG_V2 15608894-15606220 F EGN_Mt071002 20080227
Soybean Glyma11g33380.1 841 84.5 93.0  
Lotus Consensus KMC003203A_C01 565 99.7 99.7 KMC003203A_c01
3' Unigene BP039231 1001 99.8 99.8 MFB072c11_f
5' Unigene AV428808 765 98.8 98.8 MWM067b07_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0065.210.nc length: 516 aa.
IPR007064 NMD3
method AccNumber shortName E-value location
HMMPfam PF04981 NMD3 1.4e-108 22-254
no_ID  
HMMPanther PTHR12746 NONSENSE-MEDIATED 1.5e-175 18-516
Seg seg seg NA 329-341
488-513
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0065.210.nc 516 0.093 0.081 0.129 0.812 _ 2
Wolf-PSORT
chr2.CM0065.210.nc	cyto 8, nucl 4, cyto_pero 4, cyto_E.R. 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0065.210.nc Not targeted -98.211 0 -51.867 99.94% -46.344