Miyakogusa Predicted Gene

chr2.CM0056.450.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0056
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q0WSK2_ARATH 1299 72.4 81.4 (tr|Q0WSK2) Putative uncharacterized protein At1g60070 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=1
TAIR_pep AT1G60070.1 1301 72.5 81.5 | Symbols: | clathrin binding | chr1:22146609-22152961 REVERSE
Medicago IMGA|CT025838_33.5 1494 84.4 86.8 Adaptin, N-terminal; Gamma-adaptin, C-terminal chr05_pseudomolecule_IMGAG_V2 13978380-13992362 E EGN_Mt071002 20080227
Soybean Glyma01g03890.1 1499 84.6 88.3  
Lotus Consensus KMC004855A_C01 650 99.1 99.1 KMC004855A_c01
3' Unigene KMC000414A_C02 1009 97.5 97.5 KMC000414A_c02
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0056.450.nc length: 870 aa.
IPR002553 Adaptin, N-terminal
method AccNumber shortName E-value location
HMMPfam PF01602 Adaptin_N 2.1e-199 26-580
IPR008152 Alpha/gamma adaptin, C-terminal
Biological Process GO:0006461 protein complex assembly    
Biological Process GO:0006886 intracellular protein transport    
Cellular Component GO:0030130 clathrin coat of trans-Golgi network vesicle    
HMMPfam PF02883 Alpha_adaptinC2 1.8e-49 749-867
IPR008153 Gamma-adaptin, C-terminal
Biological Process GO:0006461 protein complex assembly    
Biological Process GO:0006886 intracellular protein transport    
Cellular Component GO:0030130 clathrin coat of trans-Golgi network vesicle    
BlastProDom PD021457 Q7ZXY9_XENLA_Q7ZXY9; 2e-13 755-867
ProfileScan PS50180 GAE 49.686 752-867
no_ID  
Gene3D 1.25.10.10 no description 3.3e-128 31-595
Gene3D 2.60.40.1230 no description 6.3e-33 724-867
HMMPanther PTHR22780 ADAPTIN, 0 10-870
HMMPanther PTHR22780:SF5 ADAPTER-RELATED 0 10-870
Seg seg seg NA 249-260
624-660
689-697
710-725
superfamily SSF48371 ARM 5.2e-105 6-581
superfamily SSF49348 Clathrin 6.3e-42 729-869
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0056.450.nc 870 0.056 0.609 0.065 0.448 M 5
Wolf-PSORT
chr2.CM0056.450.nc	chlo 9.5, chlo_mito 6, nucl 2, mito 1.5, cyto_nucl 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0056.450.nc Not targeted -39.440 0 -9.272 52.06% -30.168