Miyakogusa Predicted Gene

chr2.CM0056.430.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0056
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q980_VITVI 1191 81.7 91.1 (tr|A7Q980) Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033369001 PE=3 SV=1
TAIR_pep AT5G26830.1 1087 76.8 86.9 | Symbols: | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) | chr5:9437354-9441571 FORWARD
Medicago IMGA|CT025838_1.5 1220 84.8 90.5 Threonyl-tRNA synthetase, class IIa; Anticodon-binding; Aminoacyl-transfer RNA synthetase, class II chr05_pseudomolecule_IMGAG_V2 14012359-14022792 E EGN_Mt071002 20080227
Soybean Glyma01g03930.1 1331 88.4 93.7  
Lotus Consensus KMC003734A_C01 787 100.0 100.0 KMC003734A_c01
3' Unigene KMC003734A_C01 587 100.0 100.0 KMC003734A_c01
5' Unigene AV408893 636 100.0 100.0 MWL048d01_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0056.430.nc length: 715 aa.
IPR002314 tRNA synthetase, class II (G, H, P and S)
method AccNumber shortName E-value location
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
HMMPfam PF00587 tRNA-synt_2b 5.1e-62 352-516
IPR002320 Threonyl-tRNA synthetase, class IIa
Molecular Function GO:0004829 threonine-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006435 threonyl-tRNA aminoacylation    
FPrintScan PR01047 TRNASYNTHTHR 9.4e-56 408-436
441-464
542-570
586-599
613-625
HMMTigr TIGR00418 thrS: 8.9e-264 152-711
IPR004095 TGS
HMMPfam PF02824 TGS 7.7e-23 81-141
IPR004154 Anticodon-binding
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006412 protein biosynthesis    
HMMPfam PF03129 HGTP_anticodon 4.8e-26 620-710
superfamily SSF52954 Anticodon-binding 1.4e-27 616-713
IPR006195 Aminoacyl-transfer RNA synthetase, class II
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
ProfileScan PS50862 AA_TRNA_LIGASE_II 25.379 347-613
IPR012676 TGS-like
superfamily SSF81271 TGS-like 1.7e-16 81-142
IPR012947 Threonyl/alanyl tRNA synthetase, SAD
HMMPfam PF07973 tRNA_SAD 6.6e-22 249-298
no_ID  
Gene3D 3.10.20.30 no description 2.5e-15 80-144
Gene3D 3.30.930.10 no description 3.5e-106 321-609
Gene3D 3.30.980.10 no description 5.5e-27 145-312
Gene3D 3.40.50.800 no description 4.6e-29 610-711
HMMPanther PTHR11451 TRNA 1.8e-280 255-712
HMMPanther PTHR11451:SF5 THREONYL-TRNA 1.8e-280 255-712
Seg seg seg NA 18-27
31-39
superfamily SSF55186 Threonyl-tRNA 6.5e-52 143-314
superfamily SSF55681 Class 1.9e-76 315-615
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0056.430.nc 715 0.092 0.915 0.011 0.020 M 1
Wolf-PSORT
chr2.CM0056.430.nc	chlo 5, mito 4.5, nucl 3, cyto_mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0056.430.nc Not targeted -47.223 -0.866 -11.512 69.15% -34.844