Miyakogusa Predicted Gene

chr2.CM0031.340.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0031
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PG84_VITVI 761 48.9 58.8 (tr|A7PG84) Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017429001 PE=4 SV=1
TAIR_pep AT5G21160.1 571 50.9 63.3 | Symbols: | La domain-containing protein / proline-rich family protein | chr5:7199194-7203882 REVERSE
Medicago IMGA|AC130803_8.4 130 42.9 50.2 Homeodomain-related chr05_pseudomolecule_IMGAG_V2 31746663-31749183 H EGN_Mt071002 20080227
Soybean Glyma02g44310.1 1137 65.0 70.8  
Lotus Consensus KMC000230A_C01 153 98.8 98.8 KMC000230A_c01
3' Unigene KMC000230A_C01 1074 98.6 98.6 KMC000230A_c01
5' Unigene AV408822 605 95.7 95.7 MWL047e02_r
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0031.340.nc length: 886 aa.
IPR006607 Protein of unknown function DM15
method AccNumber shortName E-value location
HMMSmart SM00684 no description 4.4e-05 725-766
767-805
806-841
IPR006630 RNA-binding protein Lupus La
HMMPfam PF05383 La 6.5e-33 272-329
HMMSmart SM00715 no description 4.9e-30 266-342
ProfileScan PS50961 HTH_LA 25.899 262-351
no_ID  
FPrintScan PR01217 PRICHEXTENSN 7.3e-09 53-65
93-105
111-132
218-243
253-265
Gene3D 1.10.10.10 no description 6.9e-23 259-348
HMMPanther PTHR22792 LUPUS 4.5e-161 253-410
434-871
HMMPanther PTHR22792:SF5 RNA-BINDING 4.5e-161 253-410
434-871
Seg seg seg NA 14-36
84-105
114-122
202-217
225-239
688-705
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0031.340.nc 886 0.116 0.166 0.022 0.679 _ 3
Wolf-PSORT
chr2.CM0031.340.nc	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0031.340.nc Not targeted -49.310 -0.290 -8.976 73.18% -40.044