Miyakogusa Predicted Gene

chr2.CM0018.600.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0018
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PPV9_VITVI 269 82.4 93.7 (tr|A7PPV9) Chromosome chr18 scaffold_24, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021805001 PE=4 SV=1
TAIR_pep AT4G10070.1 219 70.0 85.0 | Symbols: | KH domain-containing protein | chr4:6295604-6299755 REVERSE
Medicago IMGA|CU326394_10.4 304 91.8 98.7 KH, type 1 chr05_pseudomolecule_IMGAG_V2 1555351-1546296 E EGN_Mt071002 20080227
Soybean Glyma04g16310.1 261 83.6 88.7  
3' Unigene BP033788 557 99.0 99.0 MFL014c10_f
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0018.600.nd length: 423 aa.
IPR004087 KH
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00322 no description 4.6e-18 1-61
84-158
IPR004088 KH, type 1
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00013 KH_1 7e-23 2-56
87-153
ProfileScan PS50084 KH_TYPE_1 18.638 1-56
85-153
no_ID  
Gene3D 3.30.1370.10 no description 1.2e-15 1-60
84-161
HMMPanther PTHR10288 RNA-BINDING 4.8e-68 1-159
HMMPanther PTHR10288:SF53 UNCHARACTERIZED 4.8e-68 1-159
Seg seg seg NA 231-244
superfamily SSF54791 Eukaryotic 4.1e-10 84-174
1-62
Putative transmembrane regions
  From To
TM segments
SOSUI		 216 238
244 266
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0018.600.nd 423 0.043 0.406 0.047 0.585 _ 5
Wolf-PSORT
chr2.CM0018.600.nd	chlo 5, cyto 3, mito 2, cyto_nucl 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0018.600.nd Not targeted -23.099 -21.470 -7.647 17.52% 6.018