Miyakogusa Predicted Gene

chr2.CM0018.160.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0018
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A9PID5_POPTR 272 73.8 83.4 (tr|A9PID5) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
TAIR_pep AT1G51510.1 246 66.0 81.4 | Symbols: Y14 | Y14; RNA binding / protein binding | chr1:19106740-19108421 REVERSE
Medicago IMGA|AC144459_24.5 57.0 32.7 54.1 RNA-binding region RNP-1 (RNA recognition motif); HMG-I and HMG-Y, DNA-binding chr05_pseudomolecule_IMGAG_V2 23848157-23844573 F EGN_Mt071002 20080227
Soybean Glyma01g43710.1 342 90.8 94.1  
Lotus Consensus KMC015124A_C01 1114 99.8 99.8 KMC015124A_c01
3' Unigene KMC015124A_C01 904 97.2 97.2 KMC015124A_c01
5' Unigene R_KMC001753A_C01 728 100.0 100.0 R_KMC001753A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0018.160.nd length: 265 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.1e-18 99-170
HMMSmart SM00360 no description 4.1e-19 98-171
ProfileScan PS50102 RRM 16.006 97-175
IPR002048 Calcium-binding EF-hand
Molecular Function GO:0005509 calcium ion binding    
ScanRegExp PS00018 EF_HAND_1 NA 67-79
IPR008111 RNA binding motif protein 8
Molecular Function GO:0003723 RNA binding    
Cellular Component GO:0005634 nucleus    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006396 RNA processing    
FPrintScan PR01738 RNABINDINGM8 6.9e-19 51-63
88-102
144-160
162-174
no_ID  
Gene3D 3.30.70.330 no description 7.9e-29 55-189
HMMPanther PTHR23139 RNA-BINDING 4.2e-18 111-188
HMMPanther PTHR23139:SF8 RNA 4.2e-18 111-188
superfamily SSF54928 RNA-binding 1.3e-22 80-181
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0018.160.nd 265 0.250 0.049 0.030 0.860 _ 2
Wolf-PSORT
chr2.CM0018.160.nd	golg 4, cyto 3, plas 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0018.160.nd Not targeted -39.046 -2.338 -6.403 51.14% -30.305