Miyakogusa Predicted Gene

chr2.CM0018.1270.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0018
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q8GUZ9_POPTM 1987 86.8 92.6 (tr|Q8GUZ9) Cellulose synthase-like protein D4 (Fragment) OS=Populus tremuloides GN=CSLD4 PE=2 SV=1
TAIR_pep AT3G03050.1 1953 82.8 90.3 | Symbols: KJK, ATCSLD3, CSLD3 | CSLD3 (CELLULOSE SYNTHASE-LIKE 3); cellulose synthase/ transferase, transferring glycosyl groups | chr3:687880-691636 FORWARD
Medicago IMGA|AC152156_27.4 1925 87.2 91.5 Cellulose synthase chr04_pseudomolecule_IMGAG_V2 20923087-20918335 E EGN_Mt071002 20080227
Soybean Glyma11g01230.1 2151 91.5 95.2  
Lotus Consensus KMC004106A_C01 252 85.5 85.5 KMC004106A_c01
3' Unigene KMC004106A_C01 254 85.5 85.5 KMC004106A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr2.CM0018.1270.nc length: 1146 aa.
IPR005150 Cellulose synthase
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthesis    
HMMPfam PF03552 Cellulose_synt 0 276-1146
no_ID  
Gene3D 3.30.40.10 no description 1e-14 114-207
Seg seg seg NA 3-23
577-594
superfamily SSF53448 Nucleotide-diphospho-sugar 0.0051 373-639
superfamily SSF57850 RING/U-box 0.00011 119-183
Putative transmembrane regions
  From To
TM segments
SOSUI		 285 307
318 340
925 947
958 980
998 1020
1045 1067
1080 1102
1111 1133
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr2.CM0018.1270.nc 1146 0.536 0.275 0.056 0.160 C 4
Wolf-PSORT
chr2.CM0018.1270.nc	plas 11, E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr2.CM0018.1270.nc Not targeted -54.906 0 -9.361 82.40% -45.545