Miyakogusa Predicted Gene

chr1.LjT43D18.20.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT43D18
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QKT7_VITVI 256 81.1 88.1 (tr|A7QKT7) Chromosome undetermined scaffold_114, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001268001 PE=4 SV=1
TAIR_pep AT1G76010.1 182 64.9 80.9 | Symbols: | nucleic acid binding | chr1:28532166-28534149 REVERSE
Medicago IMGA|AC130200_12.4 272 86.1 90.5 Alba, DNA binding chr07_pseudomolecule_IMGAG_V2 11401755-11397006 H EGN_Mt071002 20080227
Soybean Glyma06g15380.1 202 68.3 83.8  
Lotus Consensus KMC009175A_C01 50.1 91.9 91.9 KMC009175A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.LjT43D18.20.nd length: 357 aa.
IPR002775 Alba, DNA/RNA-binding protein
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01918 Alba 1.4e-28 17-87
IPR002952 Eggshell protein
FPrintScan PR01228 EGGSHELL 3e-06 42-58
156-171
181-191
212-230
no_ID  
Gene3D 3.30.110.20 no description 0.00027 16-114
HMMPanther PTHR13516 RIBONUCLEASE 1.4e-58 1-295
Seg seg seg NA 164-356
superfamily SSF82704 DNA-binding 3.8e-24 19-115
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.LjT43D18.20.nd 357 0.062 0.149 0.028 0.890 _ 2
Wolf-PSORT
chr1.LjT43D18.20.nd	nucl 6, cyto 4, pero 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.LjT43D18.20.nd Not targeted -49.166 0 -7.072 72.91% -42.094