Miyakogusa Predicted Gene

chr1.LjT14G19.110.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT14G19
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PZ14_VITVI 3137 77.8 86.1 (tr|A7PZ14) Chromosome chr4 scaffold_39, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026717001 PE=4 SV=1
TAIR_pep AT1G64790.1 2874 70.9 81.6 | Symbols: | binding | chr1:24068895-24085571 REVERSE
Medicago IMGA|AC173290_6.4 43.9 25.0 39.0 HEAT chr02_pseudomolecule_IMGAG_V2 663980-657621 E EGN_Mt071002 20080227
Soybean Glyma03g41290.1 3432 85.6 89.4  
Lotus Consensus KMC014246A_C01 1292 99.4 99.4 KMC014246A_c01
3' Unigene KMC005614A_C01 678 94.8 94.8 KMC005614A_c01
5' Unigene AV408251 224 100.0 100.0 MWL038e01_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.LjT14G19.110.nc length: 1988 aa.
IPR000357 HEAT
method AccNumber shortName E-value location
HMMPfam PF02985 HEAT 0.00094 490-521
776-811
814-849
854-890
974-1010
1092-1128
1130-1166
1240-1276
1278-1314
1320-1356
1429-1465
1468-1503
1584-1620
1668-1704
1746-1782
1827-1863
1871-1907
ProfileScan PS50077 HEAT_REPEAT 11.192 980-1018
no_ID  
Gene3D 1.25.10.10 no description 1.8e-58 651-1393
1394-1912
HMMPanther PTHR23346 TRANSLATIONAL 0 9-63
90-1988
HMMPanther PTHR23346:SF7 TRANSLATIONAL 0 9-63
90-1988
Seg seg seg NA 233-248
508-518
793-806
1691-1704
1974-1987
superfamily SSF48371 ARM 0.0026 964-1467
1512-1755
1756-1946
577-771
772-963
236-538
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.LjT14G19.110.nc 1988 0.029 0.088 0.269 0.657 _ 4
Wolf-PSORT
chr1.LjT14G19.110.nc	plas 8, vacu 2.5, E.R._vacu 2.5, E.R. 1.5, chlo 1, nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.LjT14G19.110.nc Not targeted -75.306 0 -35.387 97.86% -39.920