Miyakogusa Predicted Gene

chr1.LjT04O06.50.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT04O06
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2V732_SOYBN 842 67.2 74.3 (tr|Q2V732) VHS and GAT domain protein OS=Glycine max PE=2 SV=1
TAIR_pep AT4G32760.1 570 59.4 69.1 | Symbols: | protein transporter | chr4:15799381-15803837 FORWARD
Medicago IMGA|AC149809_34.4 263 47.4 71.3 GAT; ENTH/VHS chr07_pseudomolecule_IMGAG_V2 14932637-14938639 E EGN_Mt071002 20080227
Soybean Glyma04g08600.1 920 71.2 78.0  
3' Unigene KMC001310A_C01 60.0 88.9 88.9 KMC001310A_c01
5' Unigene AV420181 470 100.0 100.0 MWM178g10_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.LjT04O06.50.nc length: 658 aa.
IPR002014 VHS
method AccNumber shortName E-value location
Biological Process GO:0006886 intracellular protein transport    
BlastProDom PD003686 Q6K7U3_EEEEE_Q6K7U3; 8e-47 8-136
HMMPfam PF00790 VHS 1e-29 5-113
HMMSmart SM00288 no description 2.8e-54 2-134
ProfileScan PS50179 VHS 43.788 9-138
IPR004152 GAT
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006886 intracellular protein transport    
HMMPfam PF03127 GAT 1.5e-31 179-277
ProfileScan PS50909 GAT 17.271 180-268
no_ID  
Gene3D 1.20.58.160 no description 3e-05 176-271
Gene3D 1.25.40.90 no description 3.4e-43 2-138
HMMPanther PTHR13856 VHS 5.3e-176 10-656
HMMPanther PTHR13856:SF27 TARGET 5.3e-176 10-656
Seg seg seg NA 116-128
412-417
455-463
584-615
626-637
superfamily SSF48464 ENTH/VHS 2.9e-51 1-141
superfamily SSF89009 GAT 2.3e-33 142-271
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.LjT04O06.50.nc 658 0.085 0.041 0.177 0.831 _ 2
Wolf-PSORT
chr1.LjT04O06.50.nc	nucl 12, cyto 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.LjT04O06.50.nc Not targeted -48.063 -0.149 -3.847 70.80% -44.067