Miyakogusa Predicted Gene

chr1.LjB10L14.40.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjB10L14
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PAM9_VITVI 944 50.1 64.3 (tr|A7PAM9) Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038186001 PE=4 SV=1
TAIR_pep AT1G67230.1 801 42.9 61.3 | Symbols: LINC1 | LINC1 (LITTLE NUCLEI1) | chr1:25155224-25159695 REVERSE
Soybean Glyma18g51560.2 1645 72.9 79.8  
Lotus Consensus KMC001255A_C01 442 98.7 98.7 KMC001255A_c01
3' Unigene KMC001255A_C01 1076 99.8 99.8 KMC001255A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.LjB10L14.40.nc length: 1170 aa.
IPR001809 Borrelia outer surface lipoprotein
method AccNumber shortName E-value location
Cellular Component GO:0009279 outer membrane (sensu Proteobacteria)    
BlastProDom PD001127 Q9ZNE1_BBBBB_Q9ZNE1; 0.004 146-341
IPR009060 UBA-like
superfamily SSF46934 UBA-like 0.018 597-662
no_ID  
Coil coil coiled-coil NA 93-125
185-220
227-304
311-339
380-548
595-616
617-653
664-723
ProfileScan PS50083 SPEC_REPEAT 8.910 395-485
Seg seg seg NA 16-30
402-428
430-449
470-485
707-718
924-931
1018-1028
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.LjB10L14.40.nc 1170 0.081 0.796 0.015 0.232 M 3
Wolf-PSORT
chr1.LjB10L14.40.nc	chlo 7, nucl 4, cyto 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.LjB10L14.40.nc Not targeted -54.094 -1.006 -18.094 81.21% -34.994