Miyakogusa Predicted Gene

chr1.CM1956.620.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM1956
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q1HGA9_LINUS 719 81.7 91.6 (tr|Q1HGA9) Putative GDP-mannose pyrophosphorylase OS=Linum usitatissimum GN=GMP PE=2 SV=1
TAIR_pep AT1G74910.2 704 79.3 90.6 | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28139431-28142117 REVERSE
Medicago IMGA|AC141109_38.5 695 80.4 88.6 Nucleotidyl transferase; Trimeric LpxA-like chr04_pseudomolecule_IMGAG_V2 27108701-27102338 E EGN_Mt071002 20080227
Soybean Glyma04g34880.1 756 87.2 93.2  
3' Unigene AV767995 472 100.0 100.0 MWM211h05_f
5' Unigene AV411795 250 100.0 100.0 MWM211h05_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM1956.620.nc length: 416 aa.
IPR001451 Bacterial transferase hexapeptide repeat
method AccNumber shortName E-value location
Molecular Function GO:0008415 acyltransferase activity    
HMMPfam PF00132 Hexapep 65 295-312
313-330
336-353
386-403
IPR005835 Nucleotidyl transferase
Biological Process GO:0009058 biosynthesis    
Molecular Function GO:0016779 nucleotidyltransferase activity    
HMMPfam PF00483 NTP_transferase 2.1e-24 10-197
IPR011004 Trimeric LpxA-like
superfamily SSF51161 Trimeric 6.1e-15 315-406
no_ID  
Gene3D 2.160.10.10 no description 3.2e-09 298-367
Gene3D 3.90.550.10 no description 9.5e-38 11-277
HMMPanther PTHR22572 SUGAR-1-PHOSPHATE 8.3e-138 20-410
HMMPanther PTHR22572:SF15 MANNOSE-1-PHOSPHATE 8.3e-138 20-410
Seg seg seg NA 385-396
superfamily SSF53448 Nucleotide-diphospho-sugar 4.1e-51 7-314
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM1956.620.nc 416 0.195 0.102 0.048 0.717 _ 3
Wolf-PSORT
chr1.CM1956.620.nc	cyto 9, nucl 3, chlo 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM1956.620.nc Not targeted -44.373 -2.832 -18.580 63.20% -22.960