Miyakogusa Predicted Gene

chr1.CM0544.20.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0544
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q5S9_VITVI 1152 74.6 82.1 (tr|A7Q5S9) Chromosome chr14 scaffold_54, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031082001 PE=4 SV=1
TAIR_pep AT3G05090.2 1076 69.6 80.2 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:1418579-1422729 REVERSE
Medicago IMGA|AC148345_32.5 1332 84.4 88.4 Aldehyde dehydrogenase; WD40-like chr07_pseudomolecule_IMGAG_V2 30628853-30639715 E EGN_Mt071002 20080227
Soybean Glyma03g40360.1 1340 84.0 88.8  
Lotus Consensus KMC000010A_C02 137 98.6 98.6 KMC000010A_c02
3' Unigene AV780136 412 97.9 97.9 MPDL071e01_f
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0544.20.nc length: 764 aa.
IPR001680 WD-40 repeat
method AccNumber shortName E-value location
BlastProDom PD000018 Q8TAF3_HUMAN_Q8TAF3; 4e-05 256-289
FPrintScan PR00320 GPROTEINBRPT 7.2e-07 98-112
233-247
275-289
HMMPfam PF00400 WD40 0.00087 34-68
74-111
116-155
208-246
250-288
292-330
HMMSmart SM00320 no description 1.2e+02 19-68
73-111
115-155
207-246
249-288
291-330
333-369
ProfileScan PS50082 WD_REPEATS_2 14.585 122-157
214-255
256-297
ProfileScan PS50294 WD_REPEATS_REGION 35.541 31-339
ScanRegExp PS00678 WD_REPEATS_1 NA 98-112
275-289
IPR011046 WD40-like
superfamily SSF50978 WD40-repeat 8.7e-54 14-368
no_ID  
Gene3D 2.130.10.10 no description 3.4e-49 32-368
HMMPanther PTHR19862 FAMILY 0 65-175
216-761
HMMPanther PTHR19862:SF5 SUBFAMILY 0 65-175
216-761
Seg seg seg NA 174-200
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0544.20.nc 764 0.190 0.422 0.013 0.617 _ 5
Wolf-PSORT
chr1.CM0544.20.nc	chlo 6, nucl 4, chlo_mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0544.20.nc Not targeted -56.778 -9.309 -1.330 84.94% -46.140