Miyakogusa Predicted Gene

chr1.CM0141.280.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0141
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PMY5_VITVI 647 68.1 78.1 (tr|A7PMY5) Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020994001 PE=4 SV=1
TAIR_pep AT5G15270.1 560 59.7 74.6 | Symbols: | KH domain-containing protein | chr5:4958741-4960950 FORWARD
Medicago IMGA|AC122724_34.5 636 65.4 74.6 KH, type 1 chr06_pseudomolecule_IMGAG_V2 1917378-1922370 E EGN_Mt071002 20080227
Soybean Glyma18g49600.1 714 73.0 77.6  
3' Unigene BP052192 557 95.0 95.0 SPDL003f11_f
5' Unigene AV419744 507 100.0 100.0 MWM173b08_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0141.280.nc length: 539 aa.
IPR004087 KH
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00322 no description 9.6e-11 45-118
145-220
287-363
373-448
IPR004088 KH, type 1
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00013 KH_1 4.8e-18 48-110
148-215
290-351
376-443
ProfileScan PS50084 KH_TYPE_1 16.018 146-215
46-113
288-359
374-443
no_ID  
Gene3D 3.30.1370.10 no description 3.7e-12 34-97
145-222
276-339
373-450
HMMPanther PTHR10288 RNA-BINDING 1.9e-141 56-98
116-260
287-475
HMMPanther PTHR10288:SF55 RNA-BINDING 1.9e-141 56-98
116-260
287-475
Seg seg seg NA 22-35
233-257
298-311
487-508
519-533
superfamily SSF54791 Eukaryotic 1e-09 145-244
373-479
34-102
276-339
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0141.280.nc 539 0.083 0.465 0.025 0.692 _ 4
Wolf-PSORT
chr1.CM0141.280.nc	nucl 7, chlo 4.5, chlo_mito 3, cyto 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0141.280.nc Not targeted -34.849 -0.092 -6.524 41.34% -28.232