Miyakogusa Predicted Gene

chr1.CM0094.60.nc

Related links:

GeneModel
GBrowse(chr1.CM0094.60.nc)

Predicted Sequence Links:

Genome Sequence: CM0094

Full length sequence(534151 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	Q5XLG3_VICFA	895	90.5	94.1	(tr\|Q5XLG3) Calcium-dependent protein kinase 1 OS=Vicia faba GN=CPK1 PE=2 SV=1
TAIR_pep	AT1G35670.1	782	78.5	88.2	\| Symbols: CPK11, ATCDPK2 \| ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase \| chr1:13206668-13209270 FORWARD
Medicago	IMGA\|CU024887_21.4	888	89.7	94.3	Protein kinase; Calcium-binding EF-hand chr03_pseudomolecule_IMGAG_V2 27183134-27188014 F EGN_Mt071002 20080227
Soybean	Glyma06g16920.1	896	92.6	96.8
3' Unigene	AV767128	274	92.8	92.8	MWM154h05_f
5' Unigene	AV418237	295	100.0	100.0	MWM154h05_r

A list of protein families, domains and functional sites (searches in InterPro)

IPR000719	Protein kinase
chr1.CM0094.60.nc				length: 494 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004672	protein kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
BlastProDom	PD000001	Q84P29_SOYBN_Q84P29;	3e-132	27-284
HMMPfam	PF00069	Pkinase	1.3e-115	27-285
ProfileScan	PS50011	PROTEIN_KINASE_DOM	49.064	27-285
ScanRegExp	PS00107	PROTEIN_KINASE_ATP	NA	33-56
IPR002048	Calcium-binding EF-hand
Molecular Function	GO:0005509	calcium ion binding
BlastProDom	PD000012	CDPK_SOYBN_P28583;	4e-08	408-463 326-390
HMMPfam	PF00036	efhand	1.1e-07	332-360 368-396 404-432 438-466
HMMSmart	SM00054	no description	0.00022	332-360 368-396 404-432 438-466
ProfileScan	PS50222	EF_HAND_2	11.445	328-363 364-399 400-435 438-469
ScanRegExp	PS00018	EF_HAND_1	8e-5	341-353 377-389 413-425 447-459
IPR002290	Serine/threonine protein kinase
Molecular Function	GO:0004674	protein serine/threonine kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
HMMSmart	SM00220	no description	1.2e-103	27-285
IPR008271	Serine/threonine protein kinase, active site
Molecular Function	GO:0004674	protein serine/threonine kinase activity
Biological Process	GO:0006468	protein amino acid phosphorylation
ScanRegExp	PS00108	PROTEIN_KINASE_ST	8e-5	147-159
IPR011009	Protein kinase-like
superfamily	SSF56112	Protein	7.7e-83	22-270
no_ID
Gene3D	1.10.238.10	no description	5.2e-21	398-463
Gene3D	1.10.510.10	no description	6.5e-60	110-345
Gene3D	3.30.200.20	no description	5.5e-25	9-107
HMMPanther	PTHR22982	CALCIUM/CALMODULIN-DEPENDENT	5.8e-279	75-476
HMMPanther	PTHR22982:SF13	CALCIUM-DEPENDENT	5.8e-279	75-476
Seg	seg	seg	NA	4-17
superfamily	SSF47473	EF-hand	8e-47	271-465

Putative transmembrane regions

	From	To
TM segments SOSUI	208	230

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr1.CM0094.60.nc	494	0.129	0.364	0.057	0.689	_	4

Wolf-PSORT

chr1.CM0094.60.nc	chlo 4, extr 3, chlo_mito 3, mito 2, vacu 2

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr1.CM0094.60.nc	Not targeted	-21.818	-0.058	-3.859	15.53%	-17.900