database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | Q1G0Z1_TOBAC | 1451 | 90.6 | 93.4 | (tr|Q1G0Z1) Putative spindle disassembly related protein CDC48 OS=Nicotiana tabacum PE=2 SV=1 |
TAIR_pep | AT5G03340.1 | 1436 | 90.0 | 93.1 | | Symbols: | (Cell division control protein 48 homolog E); ATPase | chr5:810090-813132 REVERSE |
Medicago | IMGA|AC159089_1.4 | 689 | 86.6 | 88.4 | AAA ATPase, central region chr07_pseudomolecule_IMGAG_V2 25391828-25387898 E EGN_Mt071002 20080227 |
Soybean | Glyma03g33990.1 | 1472 | 92.8 | 94.1 | |
3' Unigene | BP063563 | 458 | 100.0 | 100.0 | GENLf023d09 |
chr1.CM0033.1130.nc | length: 808 aa. | |||
IPR003338 | AAA ATPase VAT, N-terminal | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0005524 | ATP binding | ||
HMMPfam | PF02359 | CDC48_N | 4.9e-40 | 27-113 |
IPR003593 | AAA+ ATPase, core | |||
Molecular Function | GO:0000166 | nucleotide binding | ||
Molecular Function | GO:0017111 | nucleoside-triphosphatase activity | ||
HMMSmart | SM00382 | no description | 2.4e-24 | 241-377 514-653 |
IPR003959 | AAA ATPase, core | |||
Molecular Function | GO:0005524 | ATP binding | ||
HMMPfam | PF00004 | AAA | 8.6e-102 | 244-428 517-704 |
IPR003960 | AAA ATPase, subdomain | |||
Molecular Function | GO:0005524 | ATP binding | ||
ScanRegExp | PS00674 | AAA | 8e-5 | 345-363 621-639 |
IPR004201 | Cell division protein 48, CDC48, domain 2 | |||
Molecular Function | GO:0005524 | ATP binding | ||
HMMPfam | PF02933 | CDC48_2 | 0.041 | 123-196 |
IPR005938 | AAA ATPase, CDC48 | |||
Molecular Function | GO:0016787 | hydrolase activity | ||
HMMTigr | TIGR01243 | CDC48: | 8.1e-251 | 28-770 |
IPR009010 | Aspartate decarboxylase-like fold | |||
superfamily | SSF50692 | ADC-like | 9.4e-29 | 26-111 |
no_ID | ||||
Gene3D | 1.10.8.60 | no description | 1.1e-22 | 376-462 654-739 |
Gene3D | 2.40.40.20 | no description | 2.2e-37 | 22-113 |
Gene3D | 3.10.330.10 | no description | 7.6e-35 | 114-190 |
Gene3D | 3.40.50.300 | no description | 1.1e-65 | 193-373 466-649 |
HMMPanther | PTHR23077 | AAA-FAMILY | 0 | 174-808 |
HMMPanther | PTHR23077:SF18 | CELL | 0 | 174-808 |
Seg | seg | seg | NA | 432-445 590-604 722-734 779-803 |
superfamily | SSF52540 | P-loop | 3.9e-59 | 454-715 137-442 |
Name | Length | cTP | mTP | SP | other | Loc. | RC |
---|---|---|---|---|---|---|---|
chr1.CM0033.1130.nc | 809 | 0.411 | 0.063 | 0.058 | 0.792 | _ | 4 |
chr1.CM0033.1130.nc chlo 7, cyto 3, nucl 2, cyto_plas 2
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
chr1.CM0033.1130.nc | Not targeted | -87.260 | 0 | -44.556 | 99.60% | -42.704 |