Miyakogusa Predicted Gene

chr1.CM0033.1130.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0033
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q1G0Z1_TOBAC 1451 90.6 93.4 (tr|Q1G0Z1) Putative spindle disassembly related protein CDC48 OS=Nicotiana tabacum PE=2 SV=1
TAIR_pep AT5G03340.1 1436 90.0 93.1 | Symbols: | (Cell division control protein 48 homolog E); ATPase | chr5:810090-813132 REVERSE
Medicago IMGA|AC159089_1.4 689 86.6 88.4 AAA ATPase, central region chr07_pseudomolecule_IMGAG_V2 25391828-25387898 E EGN_Mt071002 20080227
Soybean Glyma03g33990.1 1472 92.8 94.1  
3' Unigene BP063563 458 100.0 100.0 GENLf023d09
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0033.1130.nc length: 808 aa.
IPR003338 AAA ATPase VAT, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
HMMPfam PF02359 CDC48_N 4.9e-40 27-113
IPR003593 AAA+ ATPase, core
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 2.4e-24 241-377
514-653
IPR003959 AAA ATPase, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 8.6e-102 244-428
517-704
IPR003960 AAA ATPase, subdomain
Molecular Function GO:0005524 ATP binding    
ScanRegExp PS00674 AAA 8e-5 345-363
621-639
IPR004201 Cell division protein 48, CDC48, domain 2
Molecular Function GO:0005524 ATP binding    
HMMPfam PF02933 CDC48_2 0.041 123-196
IPR005938 AAA ATPase, CDC48
Molecular Function GO:0016787 hydrolase activity    
HMMTigr TIGR01243 CDC48: 8.1e-251 28-770
IPR009010 Aspartate decarboxylase-like fold
superfamily SSF50692 ADC-like 9.4e-29 26-111
no_ID  
Gene3D 1.10.8.60 no description 1.1e-22 376-462
654-739
Gene3D 2.40.40.20 no description 2.2e-37 22-113
Gene3D 3.10.330.10 no description 7.6e-35 114-190
Gene3D 3.40.50.300 no description 1.1e-65 193-373
466-649
HMMPanther PTHR23077 AAA-FAMILY 0 174-808
HMMPanther PTHR23077:SF18 CELL 0 174-808
Seg seg seg NA 432-445
590-604
722-734
779-803
superfamily SSF52540 P-loop 3.9e-59 454-715
137-442
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0033.1130.nc 809 0.411 0.063 0.058 0.792 _ 4
Wolf-PSORT
chr1.CM0033.1130.nc	chlo 7, cyto 3, nucl 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0033.1130.nc Not targeted -87.260 0 -44.556 99.60% -42.704