Miyakogusa Predicted Gene

chr1.CM0371.310.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0371.310.nc + phase: 0 /partial
         (284 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13460.1 | Symbols: ECT2 | ECT2; protein binding | chr3:43852...    48   6e-06
AT3G13460.3 | Symbols: ECT2 | ECT2 | chr3:4385941-4388227 REVERSE      48   7e-06
AT3G13460.4 | Symbols: ECT2 | ECT2 | chr3:4385281-4388227 REVERSE      41   0.001

>AT3G13460.1 | Symbols: ECT2 | ECT2; protein binding |
           chr3:4385281-4388227 REVERSE
          Length = 667

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 1   MAPVPPSADKAADLLQNLSLDTNPKTTGVAEPAKKN-----GPAFSNGTAKGMTKPLTP- 54
           MA V P AD+A DLLQ LSLD+  K + + EP KK      G    +G      + LTP 
Sbjct: 1   MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVDVHGQVPSYDRSLTPM 60

Query: 55  ------NPS--FVPNXXXXXXXXXXXXXXQNDWNVYSRYMNLDG-GMAQGVYGDSCSYMY 105
                 +PS  +VPN              Q +W  Y  Y N +G  M  G+YG++ + +Y
Sbjct: 61  LPSDAADPSVCYVPNPYNPYQYYNVYGSGQ-EWTDYPAYTNPEGVDMNSGIYGENGTVVY 119

Query: 106 NQ 107
            Q
Sbjct: 120 PQ 121


>AT3G13460.3 | Symbols: ECT2 | ECT2 | chr3:4385941-4388227 REVERSE
          Length = 508

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 1   MAPVPPSADKAADLLQNLSLDTNPKTTGVAEPAKKN-----GPAFSNGTAKGMTKPLTP- 54
           MA V P AD+A DLLQ LSLD+  K + + EP KK      G    +G      + LTP 
Sbjct: 1   MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVDVHGQVPSYDRSLTPM 60

Query: 55  ------NPS--FVPNXXXXXXXXXXXXXXQNDWNVYSRYMNLDG-GMAQGVYGDSCSYMY 105
                 +PS  +VPN              Q +W  Y  Y N +G  M  G+YG++ + +Y
Sbjct: 61  LPSDAADPSVCYVPNPYNPYQYYNVYGSGQ-EWTDYPAYTNPEGVDMNSGIYGENGTVVY 119

Query: 106 NQ 107
            Q
Sbjct: 120 PQ 121


>AT3G13460.4 | Symbols: ECT2 | ECT2 | chr3:4385281-4388227 REVERSE
          Length = 666

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 17/122 (13%)

Query: 1   MAPVPPSADKAADLLQNLSLDTNPKTTGVAEPAKKN-----GPAFSNGTAKGMTKPLTP- 54
           MA V P AD   DLLQ LSLD+  K + + EP KK      G    +G      + LTP 
Sbjct: 1   MATVAPPAD-PTDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVDVHGQVPSYDRSLTPM 59

Query: 55  ------NPS--FVPNXXXXXXXXXXXXXXQNDWNVYSRYMNLDG-GMAQGVYGDSCSYMY 105
                 +PS  +VPN              Q +W  Y  Y N +G  M  G+YG++ + +Y
Sbjct: 60  LPSDAADPSVCYVPNPYNPYQYYNVYGSGQ-EWTDYPAYTNPEGVDMNSGIYGENGTVVY 118

Query: 106 NQ 107
            Q
Sbjct: 119 PQ 120