Miyakogusa Predicted Gene

chr1.CM0150.650.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0150.650.nd - phase: 0 
         (469 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34490.1 | Symbols: CAP 1, CAP1, ATCAP1 | ATCAP1 (CYCLASE ASS...   672   0.0  

>AT4G34490.1 | Symbols: CAP 1, CAP1, ATCAP1 | ATCAP1 (CYCLASE
           ASSOCIATED PROTEIN 1) | chr4:16484901-16487360 REVERSE
          Length = 476

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/477 (69%), Positives = 376/477 (78%), Gaps = 11/477 (2%)

Query: 1   MEEKLIGRLESAVARLEALSV---GFQXXXXXXDVADAA------TDPSIIAFDDLMGQY 51
           MEE LI RLE+AV RLE +S    G        D + AA      +DPSI+A++DL+ Q 
Sbjct: 1   MEEDLIKRLEAAVTRLEGISSNGGGVVSLSRGGDFSSAAGIDIASSDPSILAYEDLISQC 60

Query: 52  VARVSAAAEKIGGPVLEVTKVVQEAFAVQKQLLIKVKQSQKPNNAGLAEFLKPLNDVITK 111
           V R   AAEKIGGPVL+VTK+V EAFA QK+LL+++KQ+QKP+ AGLA FLKPLNDV  K
Sbjct: 61  VGRALTAAEKIGGPVLDVTKIVAEAFASQKELLVRIKQTQKPDLAGLAGFLKPLNDVTMK 120

Query: 112 SSAMTEGRRSDFFNHLKAAADSLTALAWIAFTGKDCGMSMPIAHVEESWQMSEFYCNKVL 171
           ++AMTEG+RSDFFNHLKAA DSL+ALAWIAFTGKDCGMSMPIAHVEESWQM+EFY NKVL
Sbjct: 121 ANAMTEGKRSDFFNHLKAACDSLSALAWIAFTGKDCGMSMPIAHVEESWQMAEFYNNKVL 180

Query: 172 VEYRNKDPNHVEWAKALKELYLPGLRDYVKGFHPLGPVWSPTGSTIXXXXXXXXXXXXXX 231
           VEYRNKD +HVEWAKALKELYLPGLR+YVK  +PLGPVW+ +G                 
Sbjct: 181 VEYRNKDADHVEWAKALKELYLPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPP 240

Query: 232 XXXXXXXXXXXXXXXXXXKPKVGMSAVFREISTGNVTSGLRKVSDDMKTKNRTDRTGVVG 291
                             K   GMSAVF+++S+G VTSGLRKV+DDMKTKNR DR+G V 
Sbjct: 241 PAPLFSAESSKPSSSSNQKQ--GMSAVFQQLSSGAVTSGLRKVTDDMKTKNRADRSGAVS 298

Query: 292 SSEKESRAGSRAFSKTGPPKFELQMGRKWVVENQIGKKDLVIEDCDSKQSVYVYGCKDSV 351
           + EKE+R    AFSKTGPPK ELQMGRKW VENQIGKKDLVI +CDSKQSVY+YGCKDSV
Sbjct: 299 AVEKETRTSKPAFSKTGPPKMELQMGRKWAVENQIGKKDLVISECDSKQSVYIYGCKDSV 358

Query: 352 LQIQGKVNNITIDKCTKMGVVFKDVVAACEIVNCNGVEVQCQGSAPTISVDNTSGCQLYL 411
           LQIQGKVNNITIDKCTK+GVVF DVVAA EIVNCN VEVQCQGSAPT+SVDNT+GCQLYL
Sbjct: 359 LQIQGKVNNITIDKCTKVGVVFTDVVAAFEIVNCNNVEVQCQGSAPTVSVDNTTGCQLYL 418

Query: 412 SKDSLETSISTAKSSEINVLVPGAEPDGDLVEHSLPQQYIHAFKDGRFETTPASHSG 468
           +KDSLET+I+TAKSSEINV+VPGA PDGD VEH+LPQQY H F +G+FETTP SHSG
Sbjct: 419 NKDSLETAITTAKSSEINVMVPGATPDGDWVEHALPQQYNHVFTEGKFETTPVSHSG 475