Miyakogusa Predicted Gene
- chr1.CM0141.280.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0141.280.nc + phase: 0
(539 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15270.1 | Symbols: | KH domain-containing protein | chr5:49... 560 e-160
AT5G15270.2 | Symbols: | KH domain-containing protein | chr5:49... 560 e-160
AT1G14170.3 | Symbols: | KH domain-containing protein | chr1:48... 410 e-114
AT1G14170.1 | Symbols: | KH domain-containing protein | chr1:48... 409 e-114
AT1G14170.2 | Symbols: | KH domain-containing protein | chr1:48... 405 e-113
AT5G53060.1 | Symbols: | KH domain-containing protein | chr5:21... 183 2e-46
AT4G18375.2 | Symbols: | KH domain-containing protein | chr4:10... 179 4e-45
AT4G18375.1 | Symbols: | KH domain-containing protein | chr4:10... 179 4e-45
AT1G51580.1 | Symbols: | KH domain-containing protein | chr1:19... 176 2e-44
AT2G03110.1 | Symbols: | nucleic acid binding | chr2:935431-935... 140 3e-33
AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic aci... 131 1e-30
AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic aci... 131 1e-30
AT5G46190.1 | Symbols: | KH domain-containing protein | chr5:18... 128 1e-29
AT3G04610.1 | Symbols: FLK | FLK (FLOWERING LOCUS KH DOMAIN); nu... 112 7e-25
AT4G26000.1 | Symbols: PEP | PEP (PEPPER); nucleic acid binding ... 99 7e-21
AT2G22600.1 | Symbols: | KH domain-containing protein | chr2:96... 98 1e-20
AT5G09560.1 | Symbols: | KH domain-containing protein | chr5:29... 86 7e-17
AT5G04430.2 | Symbols: | KH domain-containing protein NOVA, put... 61 2e-09
AT5G04430.1 | Symbols: | KH domain-containing protein NOVA, put... 60 2e-09
AT2G25970.1 | Symbols: | KH domain-containing protein | chr2:11... 57 2e-08
AT1G33680.1 | Symbols: | nucleic acid binding | chr1:12204036-1... 53 5e-07
AT4G10070.1 | Symbols: | KH domain-containing protein | chr4:62... 47 3e-05
>AT5G15270.1 | Symbols: | KH domain-containing protein |
chr5:4958741-4960950 FORWARD
Length = 548
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/484 (59%), Positives = 361/484 (74%), Gaps = 14/484 (2%)
Query: 4 QRGSYGKRSHSQSDSDHHXXXXXXXXXXXXXXDDQQSH-IGPDDTVYRYLCPIRKIGSVI 62
R S+ KRS QSD D + DD+ S I DDTV+RYLCP++KIGSVI
Sbjct: 11 HRDSHRKRSRPQSDYDDNGGSKRRYRG-----DDRDSLVIDRDDTVFRYLCPVKKIGSVI 65
Query: 63 GRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDSGEPISPAQDALYR 122
GRGGDIVKQLR +T++KIRIGE +PGCDERV+TIYS S+ETN D + +SPAQDAL+R
Sbjct: 66 GRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFR 125
Query: 123 VHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRI 182
+H RV+A+D R SED E G QVTAKLLVPSDQIGC++G+GGQIVQ+IRSETGAQIRI
Sbjct: 126 IHDRVVADDAR-SEDSPE--GEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI 182
Query: 183 LKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDNPSRSQHLLTSXXXXXXXXXX 242
+KD +P CAL++DEL+QISGE +VKKAL+QIA++LH+NPSRSQ+LL+S
Sbjct: 183 VKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLM 242
Query: 243 XXXXXXXXXXXXXXXLVGAYGGYKGDVGDWSRSMYSAPRDEGSMREFSVRVVCPTXXXXX 302
L+G+YG D GDWSR +Y PR++ EF +R+V P
Sbjct: 243 SHAGGPRLVGLAP--LMGSYGR---DAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIAS 297
Query: 303 XXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAVRLQPRC 362
NQ+RQ++ ATIKVDSS TEG+DCLI IS +E F+D++SPTIEA +RLQP+C
Sbjct: 298 VIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKC 357
Query: 363 SDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASE 422
SDKVERDSG+VSFTTRLLVPSSRIGC++GKGG IITEMRR+TKANIRIL KE+LPK+AS+
Sbjct: 358 SDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASD 417
Query: 423 DDEMVQISGDLDVAKDALVQVLTRLKANLFDKERAVPGFLPVMPYLPASVDGSDGLNYDS 482
DDEMVQISG+LDVAK+AL+Q+ +RL+AN+FD+E AV +PV+PY+P + D D +YDS
Sbjct: 418 DDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDS 477
Query: 483 RDGK 486
RD +
Sbjct: 478 RDSR 481
>AT5G15270.2 | Symbols: | KH domain-containing protein |
chr5:4958741-4960950 FORWARD
Length = 548
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/484 (59%), Positives = 361/484 (74%), Gaps = 14/484 (2%)
Query: 4 QRGSYGKRSHSQSDSDHHXXXXXXXXXXXXXXDDQQSH-IGPDDTVYRYLCPIRKIGSVI 62
R S+ KRS QSD D + DD+ S I DDTV+RYLCP++KIGSVI
Sbjct: 11 HRDSHRKRSRPQSDYDDNGGSKRRYRG-----DDRDSLVIDRDDTVFRYLCPVKKIGSVI 65
Query: 63 GRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDSGEPISPAQDALYR 122
GRGGDIVKQLR +T++KIRIGE +PGCDERV+TIYS S+ETN D + +SPAQDAL+R
Sbjct: 66 GRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFR 125
Query: 123 VHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRI 182
+H RV+A+D R SED E G QVTAKLLVPSDQIGC++G+GGQIVQ+IRSETGAQIRI
Sbjct: 126 IHDRVVADDAR-SEDSPE--GEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI 182
Query: 183 LKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDNPSRSQHLLTSXXXXXXXXXX 242
+KD +P CAL++DEL+QISGE +VKKAL+QIA++LH+NPSRSQ+LL+S
Sbjct: 183 VKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLM 242
Query: 243 XXXXXXXXXXXXXXXLVGAYGGYKGDVGDWSRSMYSAPRDEGSMREFSVRVVCPTXXXXX 302
L+G+YG D GDWSR +Y PR++ EF +R+V P
Sbjct: 243 SHAGGPRLVGLAP--LMGSYGR---DAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIAS 297
Query: 303 XXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAVRLQPRC 362
NQ+RQ++ ATIKVDSS TEG+DCLI IS +E F+D++SPTIEA +RLQP+C
Sbjct: 298 VIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKC 357
Query: 363 SDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASE 422
SDKVERDSG+VSFTTRLLVPSSRIGC++GKGG IITEMRR+TKANIRIL KE+LPK+AS+
Sbjct: 358 SDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASD 417
Query: 423 DDEMVQISGDLDVAKDALVQVLTRLKANLFDKERAVPGFLPVMPYLPASVDGSDGLNYDS 482
DDEMVQISG+LDVAK+AL+Q+ +RL+AN+FD+E AV +PV+PY+P + D D +YDS
Sbjct: 418 DDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDS 477
Query: 483 RDGK 486
RD +
Sbjct: 478 RDSR 481
>AT1G14170.3 | Symbols: | KH domain-containing protein |
chr1:4843460-4845250 REVERSE
Length = 479
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/484 (46%), Positives = 304/484 (62%), Gaps = 30/484 (6%)
Query: 5 RGSYGKRSHSQSDSDHHXXXXXXXXXXXXXXDDQQSHIGPDDTVYRYLCPIRKIGSVIGR 64
R +GKRS+ QS+ + Q+ I +DTVYRYLCP++K GS+IG+
Sbjct: 6 RNIHGKRSNLQSE----FTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGK 61
Query: 65 GGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDSGEPISPAQDALYRVH 124
GG+I KQ+R+ETK+ +RI E LPGC+ERVVT+YS++EE N D GE + PA DAL++VH
Sbjct: 62 GGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVH 121
Query: 125 QRVIAEDQRYSEDEMEED-GANQ-VTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRI 182
V+A+ + + + D G Q VT ++LVPSDQIGCVIGKGGQ++Q++R++T AQIR+
Sbjct: 122 DMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV 181
Query: 183 LKDDRLPPCA--LSNDELVQISGEAAVVKKALVQIATQLHDNPSRSQHLLTSXXXXXXXX 240
+K D LP CA LS+DEL+ I GE VV++AL Q+A+ LHDNPSR QHLL S
Sbjct: 182 IK-DHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQ 240
Query: 241 XXXXXXXXXXXXXXXXXLVGAYGGYKGDVGDWSRSMYSAPRDEGSMREFSVRVVCPTXXX 300
S Y+ RD REF V +CP
Sbjct: 241 PGAMLMSAALTS--------------------SHRNYAVRRDIADAREFCVCFICPAENV 280
Query: 301 XXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAVRLQP 360
NQIRQ++GATI+V++S T+ DDC+I IS+KEF++D SP + AA+RLQ
Sbjct: 281 GGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQ 339
Query: 361 RCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIA 420
RCS+KV +D+ ++ +TRLLV SS+IGCLIGKGG +I+EMR +T+ANIRIL KED+PKIA
Sbjct: 340 RCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIA 399
Query: 421 SEDDEMVQISGDLDVAKDALVQVLTRLKANLFDKERAVPGFLPVMPYLPASVDGSDGLNY 480
ED+EMVQI+G D A AL QV+ RL+AN FD + + PY+P + S Y
Sbjct: 400 REDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLLPTSFPYIPQVTESSSKSKY 459
Query: 481 DSRD 484
RD
Sbjct: 460 AKRD 463
>AT1G14170.1 | Symbols: | KH domain-containing protein |
chr1:4843460-4845250 REVERSE
Length = 454
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/450 (48%), Positives = 293/450 (65%), Gaps = 26/450 (5%)
Query: 39 QSHIGPDDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYS 98
Q+ I +DTVYRYLCP++K GS+IG+GG+I KQ+R+ETK+ +RI E LPGC+ERVVT+YS
Sbjct: 11 QNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYS 70
Query: 99 SSEETNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEED-GANQ-VTAKLLVPSD 156
++EE N D GE + PA DAL++VH V+A+ + + + D G Q VT ++LVPSD
Sbjct: 71 TNEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSD 130
Query: 157 QIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCA--LSNDELVQISGEAAVVKKALVQ 214
QIGCVIGKGGQ++Q++R++T AQIR++K D LP CA LS+DEL+ I GE VV++AL Q
Sbjct: 131 QIGCVIGKGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQ 189
Query: 215 IATQLHDNPSRSQHLLTSXXXXXXXXXXXXXXXXXXXXXXXXXLVGAYGGYKGDVGDWSR 274
+A+ LHDNPSR QHLL S S
Sbjct: 190 VASLLHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTS--------------------SH 229
Query: 275 SMYSAPRDEGSMREFSVRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDC 334
Y+ RD REF V +CP NQIRQ++GATI+V++S T+ DDC
Sbjct: 230 RNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDC 289
Query: 335 LIAISTKEFFDDSFSPTIEAAVRLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGG 394
+I IS+KEF++D SP + AA+RLQ RCS+KV +D+ ++ +TRLLV SS+IGCLIGKGG
Sbjct: 290 IIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGG 348
Query: 395 TIITEMRRLTKANIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLFDK 454
+I+EMR +T+ANIRIL KED+PKIA ED+EMVQI+G D A AL QV+ RL+AN FD
Sbjct: 349 AVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDM 408
Query: 455 ERAVPGFLPVMPYLPASVDGSDGLNYDSRD 484
+ + PY+P + S Y RD
Sbjct: 409 DHGLVLLPTSFPYIPQVTESSSKSKYAKRD 438
>AT1G14170.2 | Symbols: | KH domain-containing protein |
chr1:4843460-4845250 REVERSE
Length = 446
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/443 (49%), Positives = 289/443 (65%), Gaps = 26/443 (5%)
Query: 46 DTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETND 105
DTVYRYLCP++K GS+IG+GG+I KQ+R+ETK+ +RI E LPGC+ERVVT+YS++EE N
Sbjct: 10 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69
Query: 106 VEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEED-GANQ-VTAKLLVPSDQIGCVIG 163
D GE + PA DAL++VH V+A+ + + + D G Q VT ++LVPSDQIGCVIG
Sbjct: 70 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 129
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCA--LSNDELVQISGEAAVVKKALVQIATQLHD 221
KGGQ++Q++R++T AQIR++K D LP CA LS+DEL+ I GE VV++AL Q+A+ LHD
Sbjct: 130 KGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 188
Query: 222 NPSRSQHLLTSXXXXXXXXXXXXXXXXXXXXXXXXXLVGAYGGYKGDVGDWSRSMYSAPR 281
NPSR QHLL S S Y+ R
Sbjct: 189 NPSRFQHLLLSSSSSSMHQPGAMLMSAALTS--------------------SHRNYAVRR 228
Query: 282 DEGSMREFSVRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTK 341
D REF V +CP NQIRQ++GATI+V++S T+ DDC+I IS+K
Sbjct: 229 DIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSK 288
Query: 342 EFFDDSFSPTIEAAVRLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMR 401
EF++D SP + AA+RLQ RCS+KV +D+ ++ +TRLLV SS+IGCLIGKGG +I+EMR
Sbjct: 289 EFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMR 347
Query: 402 RLTKANIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLFDKERAVPGF 461
+T+ANIRIL KED+PKIA ED+EMVQI+G D A AL QV+ RL+AN FD + +
Sbjct: 348 SVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 407
Query: 462 LPVMPYLPASVDGSDGLNYDSRD 484
PY+P + S Y RD
Sbjct: 408 PTSFPYIPQVTESSSKSKYAKRD 430
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 52/179 (29%)
Query: 42 IGPDDTV-YRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIR-IGETLPGC------DERV 93
+G TV R L P +IG VIG+GG +++ LR +T A+IR I + LP C DE +
Sbjct: 107 LGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELL 166
Query: 94 VTIYSSSEETNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDE-------MEEDGANQ 146
+ I GEP+ ++ALY+V + R+ M + GA
Sbjct: 167 LII-------------GEPLV-VREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAML 212
Query: 147 VTAKL-----------------------LVPSDQIGCVIGKGGQIVQSIRSETGAQIRI 182
++A L + P++ +G VIGKGG + IR ETGA IR+
Sbjct: 213 MSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRV 271
>AT5G53060.1 | Symbols: | KH domain-containing protein |
chr5:21532581-21535423 FORWARD
Length = 652
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 214/425 (50%), Gaps = 22/425 (5%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDV 106
T YR LC K G VIG+ G I+K +R T A I + E +PG ER++ I S D
Sbjct: 68 TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEI--SDNRRRDP 125
Query: 107 EDSGEPISPAQDALYRVHQRVIAEDQRYS----EDEMEED------GANQVTAKLLVPSD 156
+ SPAQ+AL+ VH R++ + ++ E EED G +V +L+V
Sbjct: 126 DGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRM 185
Query: 157 QIGCVIGKGGQIVQSIRSETGAQIRIL-KDDRLPPCALSNDELVQISGEAAVVKKALVQI 215
+GC++GKGG+I++ +R ET IRIL ++ LP C ++E+VQI GE VK AL +
Sbjct: 186 HVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIV 245
Query: 216 ATQLHDNPSRSQHLLTSXXXXXXXXXXXXXXXXXXXXXXXXXLVGAYGGYKGDVGDWSRS 275
+++L ++ R + G ++ + +S
Sbjct: 246 SSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQSSDRFPRGNFRNNNFSSRQS 305
Query: 276 MY-----SAPRDEGSM-REFSVRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSAT 329
Y + P E E +++CP + ++ + G ++V
Sbjct: 306 NYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVA 365
Query: 330 EGDDCLIAISTKEFFDDSFSPTIEAAVRLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCL 389
D+ +I IS++E DD F P EA + +Q + D + ++ TTRLLVPS CL
Sbjct: 366 GSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKDNLI--TTRLLVPSRDSICL 423
Query: 390 IGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKA 449
GK G+ ++E+ RLT +++IL +E++P+ AS +D ++QI+G++ A++ALV++ L++
Sbjct: 424 EGKAGS-VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRS 482
Query: 450 NLFDK 454
++F +
Sbjct: 483 HMFKE 487
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 17/178 (9%)
Query: 45 DDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETN 104
++ V++ LCP KI V+G I+ L+ E +R+ + + G DE+++TI SSEE
Sbjct: 323 EELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITI--SSEEAP 380
Query: 105 DVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGK 164
D +P PAQ+AL + ++I ++ D N +T +LLVPS C+ GK
Sbjct: 381 D-----DPFFPAQEALLHIQTQII---------DLIPDKDNLITTRLLVPSRDSICLEGK 426
Query: 165 GGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
G V I TG ++IL + +P CA ND ++QI+GE ++ALV++ L +
Sbjct: 427 AGS-VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSH 483
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 285 SMREFSVRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTKEFF 344
+M + R++C IRQ +GA I V + +I IS
Sbjct: 64 TMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRR 123
Query: 345 DD-----SFSPTIEAAVRLQPRC-----------------SDKVERDSGIVSFTTRLLVP 382
D SFSP EA + R D G TRL+V
Sbjct: 124 DPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVS 183
Query: 383 SSRIGCLIGKGGTIITEMRRLTKANIRILPKE-DLPKIASEDDEMVQISGDLDVAKDALV 441
+GCL+GKGG II +MR TK +IRILP+E +LP+ S +E+VQI G+L+ K+AL
Sbjct: 184 RMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALA 243
Query: 442 QVLTRLK 448
V +RL+
Sbjct: 244 IVSSRLR 250
>AT4G18375.2 | Symbols: | KH domain-containing protein |
chr4:10152836-10155136 FORWARD
Length = 606
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 225/476 (47%), Gaps = 56/476 (11%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSS----SEE 102
VYR LCPI +G VIG+ G ++ +R TKAKI++ + L GC +RV+TIY S EE
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 103 TNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVI 162
+ EP+ AQDAL +V+ ++A D+ + + D + +LLVP Q +I
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEE-NNTKTNVDRDDNKECRLLVPFSQSSSLI 154
Query: 163 GKGGQIVQSIRSETGAQIRILKDDRLPP---CALSNDELVQISGEAAVVKKALVQIATQL 219
GK G+ ++ IR T A ++++ D P CA+ D +V ISGE VK+AL ++ +
Sbjct: 155 GKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIM 214
Query: 220 HD-NP-------SRSQHLLTSXXXXXXXXXXXXXXXXXXXXXXXXXL------------- 258
+ NP S SQ + + L
Sbjct: 215 YKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNAL 274
Query: 259 -VGAYGGYKGDVGD----WSRSMYSAPRDEGSMR--EFSVRVVCPTXXXXXXXXXXXXXX 311
V + GY + ++ S+ GS R E +V+CP
Sbjct: 275 SVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTI 334
Query: 312 NQIRQDSGATIKVDSSATE-GDD-CLIAISTKEFFDDSFSPTIEAAVRLQPRCSDKVERD 369
+IR+ SG+ I+V+ S T+ GDD C+I ++ E DD S +EA + LQ +D+ +
Sbjct: 335 KRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDAEN 394
Query: 370 SGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQI 429
+LLV S IGC+IGK G++I E+R+ T ANI I + D++V++
Sbjct: 395 -----VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICIS--------KGKKDDLVEV 441
Query: 430 SGDLDVAKDALVQVLTRLKANLFDKERAVPGFLPVMPYLPASVDGSDGLNYDSRDG 485
SG++ +DAL+Q++ RL+ ++ + +V P PA D L+ S G
Sbjct: 442 SGEVSSVRDALIQIVLRLREDVLGDKDSVATRKP-----PARTDNCSFLSGSSNAG 492
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 27/179 (15%)
Query: 45 DDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGC-DERVVTIYSSSEET 103
++ V++ LCP+ I VIG+GG +K++R + + I + ++ C D+ V I +++E
Sbjct: 310 EELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESP 369
Query: 104 NDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIG 163
+D++ S A +A+ + Q Y DE E+ V +LLV S IGCVIG
Sbjct: 370 DDMK------SMAVEAVLLL--------QEYINDEDAEN----VKMQLLVSSKVIGCVIG 411
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
K G ++ IR T A I I K + D+LV++SGE + V+ AL+QI +L ++
Sbjct: 412 KSGSVINEIRKRTNANICISKGKK--------DDLVEVSGEVSSVRDALIQIVLRLRED 462
>AT4G18375.1 | Symbols: | KH domain-containing protein |
chr4:10152836-10154847 FORWARD
Length = 532
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 225/476 (47%), Gaps = 56/476 (11%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSS----SEE 102
VYR LCPI +G VIG+ G ++ +R TKAKI++ + L GC +RV+TIY S EE
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 103 TNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVI 162
+ EP+ AQDAL +V+ ++A D+ + + D + +LLVP Q +I
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEE-NNTKTNVDRDDNKECRLLVPFSQSSSLI 154
Query: 163 GKGGQIVQSIRSETGAQIRILKDDRLPP---CALSNDELVQISGEAAVVKKALVQIATQL 219
GK G+ ++ IR T A ++++ D P CA+ D +V ISGE VK+AL ++ +
Sbjct: 155 GKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIM 214
Query: 220 HD-NP-------SRSQHLLTSXXXXXXXXXXXXXXXXXXXXXXXXXL------------- 258
+ NP S SQ + + L
Sbjct: 215 YKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNAL 274
Query: 259 -VGAYGGYKGDVGD----WSRSMYSAPRDEGSMR--EFSVRVVCPTXXXXXXXXXXXXXX 311
V + GY + ++ S+ GS R E +V+CP
Sbjct: 275 SVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTI 334
Query: 312 NQIRQDSGATIKVDSSATE-GDD-CLIAISTKEFFDDSFSPTIEAAVRLQPRCSDKVERD 369
+IR+ SG+ I+V+ S T+ GDD C+I ++ E DD S +EA + LQ +D+ +
Sbjct: 335 KRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDAEN 394
Query: 370 SGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQI 429
+LLV S IGC+IGK G++I E+R+ T ANI I + D++V++
Sbjct: 395 -----VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICIS--------KGKKDDLVEV 441
Query: 430 SGDLDVAKDALVQVLTRLKANLFDKERAVPGFLPVMPYLPASVDGSDGLNYDSRDG 485
SG++ +DAL+Q++ RL+ ++ + +V P PA D L+ S G
Sbjct: 442 SGEVSSVRDALIQIVLRLREDVLGDKDSVATRKP-----PARTDNCSFLSGSSNAG 492
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 27/179 (15%)
Query: 45 DDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGC-DERVVTIYSSSEET 103
++ V++ LCP+ I VIG+GG +K++R + + I + ++ C D+ V I +++E
Sbjct: 310 EELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESP 369
Query: 104 NDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIG 163
+D++ S A +A+ + + + ED A V +LLV S IGCVIG
Sbjct: 370 DDMK------SMAVEAVLLLQEYINDED------------AENVKMQLLVSSKVIGCVIG 411
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
K G ++ IR T A I I K + D+LV++SGE + V+ AL+QI +L ++
Sbjct: 412 KSGSVINEIRKRTNANICISKGKK--------DDLVEVSGEVSSVRDALIQIVLRLRED 462
>AT1G51580.1 | Symbols: | KH domain-containing protein |
chr1:19129280-19131770 FORWARD
Length = 621
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 217/437 (49%), Gaps = 53/437 (12%)
Query: 49 YRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLP-GCDERVVTIYSSS----EET 103
+R LCP + G++IG+GG +++ L++ T +KIR+ + +P +ERVV I + S +E+
Sbjct: 21 FRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDES 80
Query: 104 N--DVEDSG---------------------EPISPAQDALYRVHQRVIAEDQRYSEDEME 140
N D E+ G E S AQ AL RV +R++ D + D E
Sbjct: 81 NVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAATVDGDE 140
Query: 141 ED-GANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELV 199
D G ++ +++V +Q+ ++ KGG+++Q IR ++GA +RI D++PPCA D ++
Sbjct: 141 LDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVI 200
Query: 200 QISGEAAVVKKALVQIATQLHDN---PSRSQHLLTSXXXXXXXXXXXXXXXXXXXXXXXX 256
Q++G+ + VKKAL+ + L ++ P+ +
Sbjct: 201 QMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHPPPNP- 259
Query: 257 XLVGAYGGYKGDVGDWSRSMYSAPRDEGSMREFSVRVVCPTXXXXXXXXXXXXXXNQIRQ 316
DVG ++R + E + R++CP ++
Sbjct: 260 --------MPEDVGPFNRPVVE--------EEVAFRLLCPADKVGSLIGKGGAVVRALQN 303
Query: 317 DSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAVRLQPRCSD-KVERDSGIVSF 375
+SGA+IKV + ++ +I IS +E + S + +R+ R + E + +V+
Sbjct: 304 ESGASIKVSDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVA- 362
Query: 376 TTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQISGDLDV 435
RLLV S IG L+GKGG +I+EMRR T A+IR+ K+ K S+ DE+VQ+ G+L
Sbjct: 363 --RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKT 420
Query: 436 AKDALVQVLTRLKANLF 452
+DAL Q+L RL+ +F
Sbjct: 421 VQDALFQILCRLREAMF 437
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 16/177 (9%)
Query: 45 DDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETN 104
++ +R LCP K+GS+IG+GG +V+ L+ E+ A I++ + +ER++ I S+ E
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVI--SARENL 331
Query: 105 DVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGK 164
+ S AQD + RVH R++ E+ + + V A+LLV S IG ++GK
Sbjct: 332 ERRHSL-----AQDGVMRVHNRIV---------EIGFEPSAAVVARLLVHSPYIGRLLGK 377
Query: 165 GGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHD 221
GG ++ +R TGA IR+ D+ +DE+VQ+ G V+ AL QI +L +
Sbjct: 378 GGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 144 ANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLP 189
A V +LL P+ + G +IGKGG +++ ++S TG++IR++ D +P
Sbjct: 16 AESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVP 61
>AT2G03110.1 | Symbols: | nucleic acid binding | chr2:935431-935974
FORWARD
Length = 153
Score = 140 bits (352), Expect = 3e-33, Method: Composition-based stats.
Identities = 78/153 (50%), Positives = 111/153 (72%), Gaps = 8/153 (5%)
Query: 80 IRIGETLPGCDERVVTIYSSSEETNDVEDSGEP-ISPAQDALYRVHQ----RVIAEDQRY 134
+R+ E LPGCDERVVTIYS+SEE N +ED E + PA DAL++VH +D Y
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 135 SEDEMEEDGANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPC--A 192
++++ +G VT ++LVPSDQIG +IGKGG I+Q++R++T AQIR+ ++D LP C A
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALA 119
Query: 193 LSNDELVQISGEAAVVKKALVQIATQLHDNPSR 225
LS+DEL+QI G+ + V++AL Q+A L++NPSR
Sbjct: 120 LSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 371 GIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLP--KIASEDDEMVQ 428
G T R+LVPS +IG LIGKGG II +R T A IR+ ++LP +A DE++Q
Sbjct: 69 GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALALSHDELLQ 127
Query: 429 ISGDLDVAKDALVQVLTRLKAN 450
I GD ++AL QV L N
Sbjct: 128 IIGDPSAVREALYQVAFLLYNN 149
>AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic acid
binding | chr5:25760668-25763968 FORWARD
Length = 824
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 14/225 (6%)
Query: 1 MTGQRGSYGKRSHSQSDSDHHXXXXXXXXXXXXXXDDQQSHI--GPDDTVYRYLCPIRKI 58
+ GQ Y +S D+ H S + G D V++ LC
Sbjct: 404 LRGQSADYLAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENA 463
Query: 59 GSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDSGEPISPAQD 118
G VIG GG +V+ L +ET A I +G TL C+ER++ + +S E+ SPAQ
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS-------ENPECQSSPAQK 516
Query: 119 ALYRVHQRVIAEDQRYSEDEMEEDGA-NQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETG 177
A+ + R+ + +++ ++G + +TA+L+VP+ QIGCV+GKGG IV +R TG
Sbjct: 517 AIMLIFSRLF----ELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTG 572
Query: 178 AQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
A I+ILK ++ P C ND++VQI+GE V++A+ I ++L D+
Sbjct: 573 AAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 26/187 (13%)
Query: 49 YRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVE- 107
+R LCP+ +G+VIG+ G+++KQL+ T AKIR+ E G +RV+TI + ++ + V+
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 108 ---DSGEP----------ISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVP 154
++G +S AQ AL +V + + AE ++ V +LL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEAD-----------SDTVVCRLLTE 157
Query: 155 SDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQ 214
S G VIGKGGQ+V SIR ETG +I I + + LP CA ++DE+V++ G A VKKALV
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKALVS 216
Query: 215 IATQLHD 221
I+ L +
Sbjct: 217 ISRCLQN 223
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 95/166 (57%), Gaps = 4/166 (2%)
Query: 291 VRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSP 350
+++C T + ++GA I V ++ + ++ LIA++ E + SP
Sbjct: 454 FKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSP 513
Query: 351 TIEAAV----RLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKA 406
+A + RL ++K+ + S T RL+VP+S+IGC++GKGG I++EMR+ T A
Sbjct: 514 AQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGA 573
Query: 407 NIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLF 452
I+IL E PK SE+D++VQI+G+ ++A+ + +RL+ ++F
Sbjct: 574 AIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVF 619
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 378 RLLVPSSRIGCLIGKGGTIITEMRRLT--KANIRILPKEDLPKIASEDDEMVQISGDLDV 435
RLL SS G +IGKGG ++ +R+ T K +IRI E+LP A DDEMV++ G+
Sbjct: 153 RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRI---ENLPICADTDDEMVEVEGNAIA 209
Query: 436 AKDALVQV 443
K ALV +
Sbjct: 210 VKKALVSI 217
>AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic acid
binding | chr5:25760668-25764606 FORWARD
Length = 857
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 14/225 (6%)
Query: 1 MTGQRGSYGKRSHSQSDSDHHXXXXXXXXXXXXXXDDQQSHI--GPDDTVYRYLCPIRKI 58
+ GQ Y +S D+ H S + G D V++ LC
Sbjct: 404 LRGQSADYLAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENA 463
Query: 59 GSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDSGEPISPAQD 118
G VIG GG +V+ L +ET A I +G TL C+ER++ + +S E+ SPAQ
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS-------ENPECQSSPAQK 516
Query: 119 ALYRVHQRVIAEDQRYSEDEMEEDGA-NQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETG 177
A+ + R+ + +++ ++G + +TA+L+VP+ QIGCV+GKGG IV +R TG
Sbjct: 517 AIMLIFSRLF----ELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTG 572
Query: 178 AQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
A I+ILK ++ P C ND++VQI+GE V++A+ I ++L D+
Sbjct: 573 AAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 26/187 (13%)
Query: 49 YRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVE- 107
+R LCP+ +G+VIG+ G+++KQL+ T AKIR+ E G +RV+TI + ++ + V+
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 108 ---DSGEP----------ISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVP 154
++G +S AQ AL +V + + AE ++ V +LL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEAD-----------SDTVVCRLLTE 157
Query: 155 SDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQ 214
S G VIGKGGQ+V SIR ETG +I I + + LP CA ++DE+V++ G A VKKALV
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKALVS 216
Query: 215 IATQLHD 221
I+ L +
Sbjct: 217 ISRCLQN 223
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 95/166 (57%), Gaps = 4/166 (2%)
Query: 291 VRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSP 350
+++C T + ++GA I V ++ + ++ LIA++ E + SP
Sbjct: 454 FKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSP 513
Query: 351 TIEAAV----RLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKA 406
+A + RL ++K+ + S T RL+VP+S+IGC++GKGG I++EMR+ T A
Sbjct: 514 AQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGA 573
Query: 407 NIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLF 452
I+IL E PK SE+D++VQI+G+ ++A+ + +RL+ ++F
Sbjct: 574 AIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVF 619
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 378 RLLVPSSRIGCLIGKGGTIITEMRRLT--KANIRILPKEDLPKIASEDDEMVQISGDLDV 435
RLL SS G +IGKGG ++ +R+ T K +IRI E+LP A DDEMV++ G+
Sbjct: 153 RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRI---ENLPICADTDDEMVEVEGNAIA 209
Query: 436 AKDALVQV 443
K ALV +
Sbjct: 210 VKKALVSI 217
>AT5G46190.1 | Symbols: | KH domain-containing protein |
chr5:18740662-18743061 REVERSE
Length = 644
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDV 106
VYR LCP +GSVIG+ G ++ +R ET+A+I++ + PGC ERV+TI+ S E D+
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 107 E-------DSGEPISPAQDALYRVHQRVI------AEDQRYSEDEMEEDGANQVTAKLLV 153
D P+ AQ AL +VH ++ AE+ + D+ E +LLV
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRE-------CRLLV 156
Query: 154 PSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPP---CALSNDELVQISGEAAVVKK 210
PS Q VIGK G I+++IR T A ++++ D P CA+ D +V ISGE VKK
Sbjct: 157 PSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKK 216
Query: 211 ALVQIATQLHDNPSRSQ 227
AL ++ ++ R Q
Sbjct: 217 ALFAVSAIMYKVSPREQ 233
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 288 EFSVRVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKV-DSSATEGDDCLIAISTKEFFDD 346
+ +++V+C + IRQ SG+ I+V DS DDC+I ++ E DD
Sbjct: 316 KLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDD 375
Query: 347 SFSPTIEAAVRLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKA 406
S +EA + LQ + +D+ E +LLV S IGC+IGK G+II+E+R+ TKA
Sbjct: 376 LKSMAVEAVLLLQEKINDEDED-----KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKA 430
Query: 407 NIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLF-DKE 455
+I I + PK A +DE+V+ISG++ +DAL+Q++ RL+ ++ D+E
Sbjct: 431 DIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRE 480
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 18/176 (10%)
Query: 50 RYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDS 109
+ +C KIG VIG+GG +K +R + + I + ++ D+ V +++E +D++
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLK-- 377
Query: 110 GEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGKGGQIV 169
S A +A+ + +++ ED+ ++V +LLV S IGC+IGK G I+
Sbjct: 378 ----SMAVEAVLLLQEKINDEDE------------DKVKMQLLVSSKVIGCIIGKSGSII 421
Query: 170 QSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDNPSR 225
IR T A I I K + P CA NDELV+ISGE + V+ AL+QI +L D+ R
Sbjct: 422 SEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLR 477
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 292 RVVCPTXXXXXXXXXXXXXXNQIRQDSGATIKVDSSATEGDDCLIAI-----STKEFFDD 346
R++CP+ N IRQ++ A IKV + +I I K+ D
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDI 106
Query: 347 SFSPTIEAAVRLQPRCSDKVE----RDSGIVSFTT---------------RLLVPSSRIG 387
+S ++ +V P CS + D+ + S T RLLVPSS+
Sbjct: 107 EYS-ELDYSV---PLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCS 162
Query: 388 CLIGKGGTIITEMRRLTKANIRILPKE--DLPKIASED-DEMVQISGDLDVAKDALVQV 443
+IGK G+II +R T+AN++++ K+ D + D D +V ISG+ + K AL V
Sbjct: 163 IVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAV 221
>AT3G04610.1 | Symbols: FLK | FLK (FLOWERING LOCUS KH DOMAIN);
nucleic acid binding | chr3:1250768-1254278 REVERSE
Length = 577
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 44 PDDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEET 103
P +TV+R L P +K+GS+IGR GD++K++ ET+A+I+I + PG ER V + E
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPE 243
Query: 104 NDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIG 163
+ + P+ D L RVH R++ + + ++V+ +LLVP+ Q G +IG
Sbjct: 244 SS-------LPPSMDGLLRVHMRIV---DGLDGEASQAPPPSKVSTRLLVPASQAGSLIG 293
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQL 219
K G V++I+ + +R+L + LP AL +D +V++ GE V +AL IA+ L
Sbjct: 294 KQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL 349
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 313 QIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAVRLQPRCSDKVERDSGI 372
+I +++ A IK+ + + +S KE + S P+++ +R+ R D ++ ++
Sbjct: 211 KIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQ 270
Query: 373 V----SFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQ 428
+TRLLVP+S+ G LIGK G + ++ + +R+L EDLP A +DD +V+
Sbjct: 271 APPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVE 330
Query: 429 ISGDLDVAKDALVQVLTRLKANLFDKERAVPGF 461
+ G+ AL + + L+ L D+ +P F
Sbjct: 331 VVGEPTSVHRALELIASHLRKFLVDR-SIIPFF 362
>AT4G26000.1 | Symbols: PEP | PEP (PEPPER); nucleic acid binding |
chr4:13197289-13199548 FORWARD
Length = 495
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 44 PDDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEET 103
P D V+R + P+ K+G++IGR GD +K++ ET+A+I++ + +R+V I S EE
Sbjct: 71 PGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLI-SGKEEP 129
Query: 104 NDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIG 163
+SPA DA+ RV +RV +D+++ G+ + +LLV S Q +IG
Sbjct: 130 EAY------MSPAMDAVLRVFRRVSGLPDN-DDDDVQNAGSVFSSVRLLVASTQAINLIG 182
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQL 219
K G +++SI +GA +RIL ++ P A ++ +V + GEA + KAL I L
Sbjct: 183 KQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHL 238
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 316 QDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAVRLQPRCSDKVERD------ 369
+++ A IKV D ++ IS KE + SP ++A +R+ R S + D
Sbjct: 101 EETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQN 160
Query: 370 SGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQI 429
+G V + RLLV S++ LIGK G++I + + A++RIL +E+ P A++D+ +V +
Sbjct: 161 AGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDL 220
Query: 430 SGDLDVAKDALVQVLTRLKANLFDKERAVPGF 461
G+ AL ++ L+ L D VP F
Sbjct: 221 QGEALKILKALEAIVGHLRRFLVD-HTVVPLF 251
>AT2G22600.1 | Symbols: | KH domain-containing protein |
chr2:9603697-9606130 FORWARD
Length = 632
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 26/201 (12%)
Query: 41 HIGPDDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSS 100
H+ PD+T R +C IG +IG G +V +LR ET KI + G D VV I S+
Sbjct: 19 HVLPDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGST 78
Query: 101 EETNDV-------EDSGE--------PISPAQDALYRVHQR----VIAEDQRYSEDEMEE 141
+ E SG +S AQ AL RV +R + A+D D +E
Sbjct: 79 AVNQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDE 138
Query: 142 DGANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQI 201
+ +L +QIG V+G GG+ V+ +R +GA IR+L P C NDEL+QI
Sbjct: 139 EA----YCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQI 191
Query: 202 SGEAAVVKKALVQIATQLHDN 222
+G+ VKKALV +++ + +N
Sbjct: 192 TGDVLAVKKALVMVSSYIQNN 212
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDV 106
V++ + G +IG+ G I++ L+ ET A I +G L ERVVT+ +
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSAR------- 329
Query: 107 EDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGKGG 166
E+ S AQ+AL V R + D +GA V KLLVPS G G
Sbjct: 330 ENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGA-IVKTKLLVPSHFANSFNGNGN 388
Query: 167 QIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
+ ++I + TGA + I +++ N+ +++I GE + V+KAL ++++L +N
Sbjct: 389 R--EAIIA-TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLREN 441
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 379 LLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMVQISGDLDVAKD 438
+L ++IG ++G GG + MRR + A IR+LP P +++DE++QI+GD+ K
Sbjct: 144 ILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKK 200
Query: 439 ALVQVLTRLKANLFDKERAVPGFLPVMPYLPASVDGSDGLNYD 481
ALV V + ++ N + G+ P P S+ G + L+ D
Sbjct: 201 ALVMVSSYIQNN-----APLNGYPP-----PLSIKGYESLSTD 233
>AT5G09560.1 | Symbols: | KH domain-containing protein |
chr5:2967171-2969210 FORWARD
Length = 563
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 10/158 (6%)
Query: 65 GGDIVKQLRAETKAKIRIGETLPGCDERVVTIYSSSEETNDVEDSGEPISPAQDALYRVH 124
+V + R+ T A I +G+ P CDER+VTI ++ E+T D+ S +Q AL V
Sbjct: 322 SASVVIKTRSVTDASISVGDRHPDCDERLVTI-TAFEKTKDIT------SESQRALVLVF 374
Query: 125 QRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILK 184
+ + + ++ + +TA+L+V S+QI C++G+ G+I +I+ TGA I +L
Sbjct: 375 SNMY---ENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLN 431
Query: 185 DDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDN 222
++ P C N+++VQISGE V++A+ Q+ + L ++
Sbjct: 432 VEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLRED 469
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 25/195 (12%)
Query: 313 QIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPTIEAAV----RLQPRCSDKVER 368
+ R + A+I V + D+ L+ I+ E D S + A V + + KV
Sbjct: 328 KTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKV-L 386
Query: 369 DSGIVS-FTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILPKEDLPKIASEDDEMV 427
DSG+ S T RL+V S++I CL+G+ G I T +++ T A I +L E PK SE++++V
Sbjct: 387 DSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVV 446
Query: 428 QISGDLDVAKDALVQVLTRLKANLFDK-------------ERAVPG-FLPVMPYLP---- 469
QISG+ ++A+ QV + L+ +L ++ E P F P Y P
Sbjct: 447 QISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNYSEDPFPELFSPTAGYTPTFGR 506
Query: 470 -ASVDGSDGLNYDSR 483
+++D +D +Y S+
Sbjct: 507 SSTMDPNDIFHYSSQ 521
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 29/193 (15%)
Query: 49 YRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIGET-LPGCDERVVTIY---------- 97
+R LC + + G VIG+ G +VK+L T++ I + +T L R++ I+
Sbjct: 32 FRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSRVK 91
Query: 98 ------SSSEETNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKL 151
+ S ++ +S AQ AL RV + + + ++ V+ L
Sbjct: 92 LGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEAL----------NFGDCTSSTVSCNL 141
Query: 152 LVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGE-AAVVKK 210
L+ + VIGK G+++Q I ETG +++ D L C D +++I G + V K
Sbjct: 142 LMEGSHVVTVIGKNGELMQRILEETGCNVQLRSHD-LSICTNPGDVVLKIEGNRLSAVMK 200
Query: 211 ALVQIATQLHDNP 223
ALV I+++L P
Sbjct: 201 ALVSISSRLQACP 213
>AT5G04430.2 | Symbols: | KH domain-containing protein NOVA,
putative | chr5:1250603-1253524 REVERSE
Length = 334
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 22/186 (11%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIG---ETLPGCDERVVTIYSSSEET 103
T R+L GSVIG+GG + + +A++ A+I++ E PG +R++ I S +E
Sbjct: 35 THIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEV 94
Query: 104 NDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIG 163
++ + L ++H + AED +E+E + +L+VP+ G +IG
Sbjct: 95 ---------VNGLELILDKLHSELHAEDG----NEVEP----RRRIRLVVPNSSCGGIIG 137
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDNP 223
KGG ++S E+ A I+I D LS D LV +SG +A+ I +L ++
Sbjct: 138 KGGATIKSFIEESKAGIKISPLDNT-FYGLS-DRLVTLSGTFEEQMRAIDLILAKLTEDD 195
Query: 224 SRSQHL 229
SQ++
Sbjct: 196 HYSQNV 201
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 353 EAAVRLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILP 412
E + P D E DS R LV ++ G +IGKGG+ ITE + + A I++
Sbjct: 13 EELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSR 72
Query: 413 KEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANL 451
++ D ++ ISG + + L +L +L + L
Sbjct: 73 NQEF--FPGTTDRIIMISGSIKEVVNGLELILDKLHSEL 109
>AT5G04430.1 | Symbols: | KH domain-containing protein NOVA,
putative | chr5:1250603-1253524 REVERSE
Length = 313
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 22/186 (11%)
Query: 47 TVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIG---ETLPGCDERVVTIYSSSEET 103
T R+L GSVIG+GG + + +A++ A+I++ E PG +R++ I S +E
Sbjct: 35 THIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEV 94
Query: 104 NDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLVPSDQIGCVIG 163
++ + L ++H + AED +E+E + +L+VP+ G +IG
Sbjct: 95 ---------VNGLELILDKLHSELHAEDG----NEVEP----RRRIRLVVPNSSCGGIIG 137
Query: 164 KGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALVQIATQLHDNP 223
KGG ++S E+ A I+I D LS D LV +SG +A+ I +L ++
Sbjct: 138 KGGATIKSFIEESKAGIKISPLDNT-FYGLS-DRLVTLSGTFEEQMRAIDLILAKLTEDD 195
Query: 224 SRSQHL 229
SQ++
Sbjct: 196 HYSQNV 201
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 50 RYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRIG---ETLPGCDERVVTIYSSSEE---- 102
R + P G +IG+GG +K E+KA I+I T G +R+VT+ + EE
Sbjct: 124 RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMRA 183
Query: 103 --------TNDVEDSGEPISPAQDA--LYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLL 152
T D S SP A V+ +Y + E T +
Sbjct: 184 IDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHKEEAS----TTVTIG 239
Query: 153 VPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKAL 212
V + IG V+G+GG+ + I TGA+I+I DR + + D V I+G +++A
Sbjct: 240 VADEHIGLVLGRGGRNIMEITQMTGARIKI--SDRGDFMSGTTDRKVSITGPQRAIQQAE 297
Query: 213 VQIATQLHDNPSRS 226
I ++ R+
Sbjct: 298 TMIKQKVDSATERT 311
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 353 EAAVRLQPRCSDKVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKANIRILP 412
E + P D E DS R LV ++ G +IGKGG+ ITE + + A I++
Sbjct: 13 EELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSR 72
Query: 413 KEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANL 451
++ D ++ ISG + + L +L +L + L
Sbjct: 73 NQEF--FPGTTDRIIMISGSIKEVVNGLELILDKLHSEL 109
>AT2G25970.1 | Symbols: | KH domain-containing protein |
chr2:11078922-11082682 REVERSE
Length = 632
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 17/156 (10%)
Query: 54 PIRKIGSVIGRGGDIVKQLRAETKAKIRIGETL---PGCDERVVTIYSSSEETNDVEDSG 110
P ++G +IG+GG+ +K L+ ++ AKI++ + P C R V D+ +
Sbjct: 141 PNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTV----------DLTGTP 190
Query: 111 EPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAKLLV---PSDQIGCVIGKGGQ 167
+ IS A+ + V Q A + S Q A V P++++G +IGKGG+
Sbjct: 191 DQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGGE 250
Query: 168 IVQSIRSETGAQIRILKDDRLPPCALSNDELVQISG 203
++S++++TGA+I+++ LPP + + +QI G
Sbjct: 251 TIKSMQAKTGARIQVIP-LHLPPGDPTPERTLQIDG 285
>AT1G33680.1 | Symbols: | nucleic acid binding |
chr1:12204036-12208262 FORWARD
Length = 763
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 46/194 (23%)
Query: 36 DDQQSHIGPDDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRI---GETLPGCDER 92
DD QS T R P K+G++IG+GG++V+ L+ + AKI+I E P R
Sbjct: 227 DDTQS------TTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALR 280
Query: 93 VVTIYSSSEETNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTAK-- 150
V I + E ++ VIAE +E G + A+
Sbjct: 281 PVEIIGTVSCIEKAE--------------KLINAVIAE--------VEAGGVPALAARGV 318
Query: 151 -----LLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDELVQISGEA 205
+ VPSD++G +IG+GG+ ++++++++ A+I+++ + S + V+ISG+
Sbjct: 319 PEQMEIKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNE---GDASKERTVRISGD- 374
Query: 206 AVVKKALVQIATQL 219
K + IAT L
Sbjct: 375 ----KRQIDIATAL 384
>AT4G10070.1 | Symbols: | KH domain-containing protein |
chr4:6295604-6299755 REVERSE
Length = 725
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 138 EMEEDGANQVTAKLLVPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRL-PPCALSND 196
+ E DG T ++ VPS ++G +IGKGG+ ++ ++ +GA+I+IL+D P AL
Sbjct: 167 QKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSAL--- 223
Query: 197 ELVQISGEAAVVKKA 211
V+I G A ++ A
Sbjct: 224 RPVEIIGSVACIESA 238
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 43 GPDDTVYRYLCPIRKIGSVIGRGGDIVKQLRAETKAKIRI---GETLPGCDERVVTIYSS 99
G T R P K+G +IG+GG+ ++ L+ + AKI+I E P R V I S
Sbjct: 172 GTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGS 231
Query: 100 SEETNDVEDSGEPISPAQDALYRVHQRVIAEDQRYSEDEMEEDGANQVTA-------KLL 152
E ++ VIAE + + G A ++
Sbjct: 232 VACIESAE--------------KLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIK 277
Query: 153 VPSDQIGCVIGKGGQIVQSIRSETGAQIRILKDDRLPPCALSNDEL----VQISGEAAVV 208
VP+D++G +IG+GG+ ++++++ +GA+ +++ P D L V+ISG+
Sbjct: 278 VPNDKVGLIIGRGGETIKNMQTRSGARTQLI------PQHAEGDGLKERTVRISGD---- 327
Query: 209 KKALVQIATQL 219
K + IAT +
Sbjct: 328 -KMQIDIATDM 337